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The map label for this gene is traC [H]

Identifier: 22127140

GI number: 22127140

Start: 3595228

End: 3597321

Strand: Direct

Name: traC [H]

Synonym: y3265

Alternate gene names: 22127140

Gene position: 3595228-3597321 (Clockwise)

Preceding gene: 22127139

Following gene: 22127144

Centisome position: 78.14

GC content: 55.01

Gene sequence:

>2094_bases
TTGGATCTGGTTAAAAATGTCCGACAATGCTCGCTAACTGAAGCCGCGCAGCTGGTGGCCGATATTCTCGGTGTCTCACC
CAAATCTAAAGCGCCGGATCTGGCCTCTCTCATGGCGAAAACCACGCCTGGGGAATCTCGCTATTTAATTAATAAAGGTC
TGAGCAGCCATAAATTACCTATTCTGCCGGATGGTTCGTTATTGCTGATATTGCAGAATATGGCGGGGGACTGCACCGGC
GCACAGATTATCCGGCCCGATGGCACGAAAAAGCTGATCGCCGGTAGCCGCAAAAAAGGCACGTTTATCCCGCTCAAACC
GCTGCCGGAACAGGCTGAAACCGTGGTGCTGGCAGAGGGTTACGCCACCGCGCAAAGTCTGGAGTTATTGCTACCGGCCG
CCGTGATTATCGCCGCCATCGATGCCGGAAATCTGTTGCCGGTGGCACAGGCATTCCGTATCTATTGGCCTGCCGCGAAA
ATCATCATTGCGGCGGATAATGATATCAATCCACAAGACACAGCCAATGTTGGCCAGTTGTCCGCAGAAAAAGCCGCCAA
CGCGGTCAATGGTTGGGTGACATTGCCGCCAACCCCGCATAAAGCCGATTGGGATGATTACCGTCAGCAAGCCGGTACCG
GGCAGGCGCGTAACAGTTTTTATCATGGTTTGTATCAGCCGCCGCCGGTGAGCCAATTGGCTGAAAACAAAGGGTTGCAT
CCGACATTATCGCAAATGGCCGCCAGTCAGCGCGGGCAGTTATTGGCCGAACATTATGGCCAGATTGCGGTGCATGCCGA
GAGTGAAACGGTTTATCACTATGATGACGAGCGCTGGGACAAGCTGCCCGATGGTGTGTTACGACGCGAGCTGGTGATGA
TTTTCAACGCCAACGACACGCCCTATTCACCGGCCGGTATCCGCAATGCCATTGAAGCGATGAAGCTGCAAATCCCGATC
ATGGGCGAGCCACCACGCCATTTAATCGGCTTTCAGAATGGCGTTTATGACCTGAAAGCCAAACAGTTCCGGCCGCATCG
CGCCAATGATTGGTTGCAGCATCACAACGACATCATATTCACCGAACCGCAGCCAGACGAAAATCTGGCACACCACGCCC
CCCATTTCACCAAGTGGCTGGCCCATGCGGCCAATGACGAATTGCCCAAAATGGCCCGTATCAAAGCCGCGCTGTTTATG
ATTCTGTCCAACCGATTCGACTGGCAATTGTTCCTTGAGGTCACCGGCGAGGGCGGTAGCGGGAAATCGGTATTCACCTA
CATCGCCACCTTGCTGGCGGGCCGCCAGAACACCGCCTCCGGCAATATGGCGGCGCTGGATCAAGCCAGAGGGCGCGCGC
AGTTTGTCGGCAAGAGCCTGATTACGCTGCCCGATCAGGTGAAATATGTCGGCGAGGGGGCTGGCATCAAGGCCATCACC
GGCGGGGATTTAGTGGAAATCGACGGCAAATATGAGAAACAATTCAGCACCTTATTAACGGCTGTGGTGCTGGCGACCAA
TAACGAGCCGATGAGTTTCACCGAGCGGCAAGGCGGTATTGCCCGGCGGCGGGTGATTTTCGCGTTCAACCATCCCGTGA
AAGAGGCGGATAAAGATCCGCTGATCGGCGAGAAAATCGCGGCAGAACTGCCAGTGGTGATCCGCTGCCTGCTGGCTGAA
TTTGCCGACCAGGACAAGGCGCGAAAGTTGCTACTTGAGCAGCGAGATTCACGGGAGGCGATGGGGGTTAAGCGGGATGC
CGATCCGCTTTATGGCTTCTGCGCGCACATTGTCGAGCTGGGCGAGGCGGTCGGTATGTATATGGGAACGCTGGCAATTT
CCCCGCACGCCCCGCGCATTTATCTGTATCACGCTTATCTGGCTTATATGGAGGCTTACGGCCATCAGCGTTCATTATCG
TTGACCAAATTCGGCAAAGACTTTCCCAAAGTGATGGAAGAGTTCGGCGCAGAATACAAAAAAGCCAGAACTGACAAAGG
GTTCCGCTACAACATGGATTTATCCGACACCGCCAATGACTGGCTCCCCGCTCTGGCACTGCCCCACCATCCGCAACCGG
AAGAACCCCACTAA

Upstream 100 bases:

>100_bases
CTGTCCGGCCTGTGGCGGCAAAGACCGCTTTCGTTTTGATGACCGTCAGGGCGCGGGAACGTGGTTTTGTAATCAGTGCG
AACCACAATCCGGCGACGGT

Downstream 100 bases:

>100_bases
TTATTTCTCACCTCTGGCTTATTCAGAGTATTCAGAAATAGATTTAATTAATTGAAATACAAAGATAAAAACTGACTGAA
TAGTTTACTAATAACTGTTC

Product: phage DNA primase

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 697; Mature: 697

Protein sequence:

>697_residues
MDLVKNVRQCSLTEAAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLSSHKLPILPDGSLLLILQNMAGDCTG
AQIIRPDGTKKLIAGSRKKGTFIPLKPLPEQAETVVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAK
IIIAADNDINPQDTANVGQLSAEKAANAVNGWVTLPPTPHKADWDDYRQQAGTGQARNSFYHGLYQPPPVSQLAENKGLH
PTLSQMAASQRGQLLAEHYGQIAVHAESETVYHYDDERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPI
MGEPPRHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAANDELPKMARIKAALFM
ILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTASGNMAALDQARGRAQFVGKSLITLPDQVKYVGEGAGIKAIT
GGDLVEIDGKYEKQFSTLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVIRCLLAE
FADQDKARKLLLEQRDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLAISPHAPRIYLYHAYLAYMEAYGHQRSLS
LTKFGKDFPKVMEEFGAEYKKARTDKGFRYNMDLSDTANDWLPALALPHHPQPEEPH

Sequences:

>Translated_697_residues
MDLVKNVRQCSLTEAAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLSSHKLPILPDGSLLLILQNMAGDCTG
AQIIRPDGTKKLIAGSRKKGTFIPLKPLPEQAETVVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAK
IIIAADNDINPQDTANVGQLSAEKAANAVNGWVTLPPTPHKADWDDYRQQAGTGQARNSFYHGLYQPPPVSQLAENKGLH
PTLSQMAASQRGQLLAEHYGQIAVHAESETVYHYDDERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPI
MGEPPRHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAANDELPKMARIKAALFM
ILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTASGNMAALDQARGRAQFVGKSLITLPDQVKYVGEGAGIKAIT
GGDLVEIDGKYEKQFSTLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVIRCLLAE
FADQDKARKLLLEQRDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLAISPHAPRIYLYHAYLAYMEAYGHQRSLS
LTKFGKDFPKVMEEFGAEYKKARTDKGFRYNMDLSDTANDWLPALALPHHPQPEEPH
>Mature_697_residues
MDLVKNVRQCSLTEAAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLSSHKLPILPDGSLLLILQNMAGDCTG
AQIIRPDGTKKLIAGSRKKGTFIPLKPLPEQAETVVLAEGYATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAK
IIIAADNDINPQDTANVGQLSAEKAANAVNGWVTLPPTPHKADWDDYRQQAGTGQARNSFYHGLYQPPPVSQLAENKGLH
PTLSQMAASQRGQLLAEHYGQIAVHAESETVYHYDDERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPI
MGEPPRHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAANDELPKMARIKAALFM
ILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTASGNMAALDQARGRAQFVGKSLITLPDQVKYVGEGAGIKAIT
GGDLVEIDGKYEKQFSTLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVIRCLLAE
FADQDKARKLLLEQRDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLAISPHAPRIYLYHAYLAYMEAYGHQRSLS
LTKFGKDFPKVMEEFGAEYKKARTDKGFRYNMDLSDTANDWLPALALPHHPQPEEPH

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG3378

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 76784; Mature: 76784

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLVKNVRQCSLTEAAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLSSHKLP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEHHHCCCCCCCCC
ILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIAGSRKKGTFIPLKPLPEQAETVVLAEG
CCCCCCEEEEEEHHCCCCCCCEEECCCCCHHHHCCCCCCCCEECCCCCCCCCCEEEEECC
YATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDTANVGQL
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEECEEEEEEEECCCCCCCCCCCHHHH
SAEKAANAVNGWVTLPPTPHKADWDDYRQQAGTGQARNSFYHGLYQPPPVSQLAENKGLH
HHHHHHHHCCCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHCCCCC
PTLSQMAASQRGQLLAEHYGQIAVHAESETVYHYDDERWDKLPDGVLRRELVMIFNANDT
HHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCHHHHHCCHHHHHEEEEEEECCCCC
PYSPAGIRNAIEAMKLQIPIMGEPPRHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIF
CCCCHHHHHHHHHHEEEEECCCCCCHHHHCCCCCEEECCHHHCCCCCHHHHHHHCCCEEE
TEPQPDENLAHHAPHFTKWLAHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGS
ECCCCCCCHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
GKSVFTYIATLLAGRQNTASGNMAALDQARGRAQFVGKSLITLPDQVKYVGEGAGIKAIT
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCHHHCCCHHHHEECCCCCEEEEC
GGDLVEIDGKYEKQFSTLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDP
CCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCHHHCCCCC
LIGEKIAAELPVVIRCLLAEFADQDKARKLLLEQRDSREAMGVKRDADPLYGFCAHIVEL
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHH
GEAVGMYMGTLAISPHAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMEEFGAEYK
HHHHHHHHHHEEECCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHCHHHH
KARTDKGFRYNMDLSDTANDWLPALALPHHPQPEEPH
HHHCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDLVKNVRQCSLTEAAQLVADILGVSPKSKAPDLASLMAKTTPGESRYLINKGLSSHKLP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEHHHCCCCCCCCC
ILPDGSLLLILQNMAGDCTGAQIIRPDGTKKLIAGSRKKGTFIPLKPLPEQAETVVLAEG
CCCCCCEEEEEEHHCCCCCCCEEECCCCCHHHHCCCCCCCCEECCCCCCCCCCEEEEECC
YATAQSLELLLPAAVIIAAIDAGNLLPVAQAFRIYWPAAKIIIAADNDINPQDTANVGQL
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEECEEEEEEEECCCCCCCCCCCHHHH
SAEKAANAVNGWVTLPPTPHKADWDDYRQQAGTGQARNSFYHGLYQPPPVSQLAENKGLH
HHHHHHHHCCCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHCCCCC
PTLSQMAASQRGQLLAEHYGQIAVHAESETVYHYDDERWDKLPDGVLRRELVMIFNANDT
HHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCHHHHHCCHHHHHEEEEEEECCCCC
PYSPAGIRNAIEAMKLQIPIMGEPPRHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIF
CCCCHHHHHHHHHHEEEEECCCCCCHHHHCCCCCEEECCHHHCCCCCHHHHHHHCCCEEE
TEPQPDENLAHHAPHFTKWLAHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGS
ECCCCCCCHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
GKSVFTYIATLLAGRQNTASGNMAALDQARGRAQFVGKSLITLPDQVKYVGEGAGIKAIT
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCHHHCCCHHHHEECCCCCEEEEC
GGDLVEIDGKYEKQFSTLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDP
CCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCHHHCCCCC
LIGEKIAAELPVVIRCLLAEFADQDKARKLLLEQRDSREAMGVKRDADPLYGFCAHIVEL
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHH
GEAVGMYMGTLAISPHAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMEEFGAEYK
HHHHHHHHHHEEECCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHCHHHH
KARTDKGFRYNMDLSDTANDWLPALALPHHPQPEEPH
HHHCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]