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The map label for this gene is traC [H]

Identifier: 22126963

GI number: 22126963

Start: 3397011

End: 3398000

Strand: Direct

Name: traC [H]

Synonym: y3087

Alternate gene names: 22126963

Gene position: 3397011-3398000 (Clockwise)

Preceding gene: 22126962

Following gene: 22126964

Centisome position: 73.84

GC content: 51.82

Gene sequence:

>990_bases
ATGAAGTGCCGGATGCAGAGGAGGCTAACCATGAGTAGGTTTGTTTCCGACATCATTCGCGCATCACAACACCACTGGAG
CAATATCCTTTCCTCCTTAGCTATTCCTATTCCCCACCTTAACAAACATGGCCCCTGCCCCGTCTGCGGAGGTAAAGACC
GTTTTCGTTTTGATGATAAAAAAGGGCGAGGAACGTGGTTCTGCAACTATTGCGGGCACGGCGATGGTCTGGATTTGGTC
ACTCTGGTGCGACAATGTGATGTGATTCAGGCCGCCAGAGAAATCTCCCGCTTAACAGACTTAGCCCCAACAGCGCCCGC
CAAAGAAAGAACTGAACAGCCCCTTCACTCAGACATGACACAAAAAGTCACTGCCCTGCTGGCTGCCTGTTCGCAGGGAA
CCAGTGATTACCTGTTGCATAAGGGCTTAAATCATCCAGTCTTTCTCATGCCCGCCAACAGTGCTAAAAATATTGGCGGG
GTGCATTTTAATGTGGGCAGCATGGTGCTGCCACTGGTGGATCTGAGTGGCAACACTACCGGTGCGCTGTTAATCAATCG
CCGGGGAGAAAAGCGTTTACTGCCCGGCTCGCGGATTAAATCTTCATTTATCCCCATCACTCACCACACTCTGTCGCAGA
CAATAATCATTACTGAAGGCTTTGCCACCGGCCTCGTCATATCACGATTTGTCACCGCCACAGTTGTTGCCGCTATCTCA
GCCACTAATCTGACCCAGGTTGCTGTGGCACTGCGTGAACGTTATCCCGACGCGCAGATTATTATCGCGGCGGATAACGA
CGTAACAAACTCTGACAACAATCCCGGCAAACAACAGGCGGAATACGCCGCTCTTGCAGTCAATGGCTTAGTGACCCTGC
CACCCACCTGCGGCAAAGCTGACTGGGATGATTATCGCCAACAAGTCGGAACGGACGCCGCCCGTATCGAGTTTTTCCGC
CAACTCTACAATCCCAGGGAATGGATATGA

Upstream 100 bases:

>100_bases
GCACTGGTATTGGCAATGCTCGAAATTACCGATCCTACAGCGAAAGAACTGTTGCTATTTATTCTGGCTGAACGGCTGGA
TTTGCTGCAACTGATGCTGG

Downstream 100 bases:

>100_bases
AAACACCACTCATTCTGCTCGAACGCGAACCTGTGTCATTGACTACAAACCTGCCGTTGCGCAAAGGCTCCGACGGCTAT
AACACCCCGCAGGATTACAA

Product: hypothetical protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKCRMQRRLTMSRFVSDIIRASQHHWSNILSSLAIPIPHLNKHGPCPVCGGKDRFRFDDKKGRGTWFCNYCGHGDGLDLV
TLVRQCDVIQAAREISRLTDLAPTAPAKERTEQPLHSDMTQKVTALLAACSQGTSDYLLHKGLNHPVFLMPANSAKNIGG
VHFNVGSMVLPLVDLSGNTTGALLINRRGEKRLLPGSRIKSSFIPITHHTLSQTIIITEGFATGLVISRFVTATVVAAIS
ATNLTQVAVALRERYPDAQIIIAADNDVTNSDNNPGKQQAEYAALAVNGLVTLPPTCGKADWDDYRQQVGTDAARIEFFR
QLYNPREWI

Sequences:

>Translated_329_residues
MKCRMQRRLTMSRFVSDIIRASQHHWSNILSSLAIPIPHLNKHGPCPVCGGKDRFRFDDKKGRGTWFCNYCGHGDGLDLV
TLVRQCDVIQAAREISRLTDLAPTAPAKERTEQPLHSDMTQKVTALLAACSQGTSDYLLHKGLNHPVFLMPANSAKNIGG
VHFNVGSMVLPLVDLSGNTTGALLINRRGEKRLLPGSRIKSSFIPITHHTLSQTIIITEGFATGLVISRFVTATVVAAIS
ATNLTQVAVALRERYPDAQIIIAADNDVTNSDNNPGKQQAEYAALAVNGLVTLPPTCGKADWDDYRQQVGTDAARIEFFR
QLYNPREWI
>Mature_329_residues
MKCRMQRRLTMSRFVSDIIRASQHHWSNILSSLAIPIPHLNKHGPCPVCGGKDRFRFDDKKGRGTWFCNYCGHGDGLDLV
TLVRQCDVIQAAREISRLTDLAPTAPAKERTEQPLHSDMTQKVTALLAACSQGTSDYLLHKGLNHPVFLMPANSAKNIGG
VHFNVGSMVLPLVDLSGNTTGALLINRRGEKRLLPGSRIKSSFIPITHHTLSQTIIITEGFATGLVISRFVTATVVAAIS
ATNLTQVAVALRERYPDAQIIIAADNDVTNSDNNPGKQQAEYAALAVNGLVTLPPTCGKADWDDYRQQVGTDAARIEFFR
QLYNPREWI

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG4643

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 36180; Mature: 36180

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCRMQRRLTMSRFVSDIIRASQHHWSNILSSLAIPIPHLNKHGPCPVCGGKDRFRFDDK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCC
KGRGTWFCNYCGHGDGLDLVTLVRQCDVIQAAREISRLTDLAPTAPAKERTEQPLHSDMT
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHH
QKVTALLAACSQGTSDYLLHKGLNHPVFLMPANSAKNIGGVHFNVGSMVLPLVDLSGNTT
HHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCHHEEEEEECCCCCC
GALLINRRGEKRLLPGSRIKSSFIPITHHTLSQTIIITEGFATGLVISRFVTATVVAAIS
EEEEEECCCCCCCCCCCHHHHCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
ATNLTQVAVALRERYPDAQIIIAADNDVTNSDNNPGKQQAEYAALAVNGLVTLPPTCGKA
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCC
DWDDYRQQVGTDAARIEFFRQLYNPREWI
CHHHHHHHHCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKCRMQRRLTMSRFVSDIIRASQHHWSNILSSLAIPIPHLNKHGPCPVCGGKDRFRFDDK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCC
KGRGTWFCNYCGHGDGLDLVTLVRQCDVIQAAREISRLTDLAPTAPAKERTEQPLHSDMT
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHH
QKVTALLAACSQGTSDYLLHKGLNHPVFLMPANSAKNIGGVHFNVGSMVLPLVDLSGNTT
HHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCHHEEEEEECCCCCC
GALLINRRGEKRLLPGSRIKSSFIPITHHTLSQTIIITEGFATGLVISRFVTATVVAAIS
EEEEEECCCCCCCCCCCHHHHCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
ATNLTQVAVALRERYPDAQIIIAADNDVTNSDNNPGKQQAEYAALAVNGLVTLPPTCGKA
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCC
DWDDYRQQVGTDAARIEFFRQLYNPREWI
CHHHHHHHHCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]