Click here to switch to the map view.

The map label for this gene is ndpA [C]

Identifier: 22126799

GI number: 22126799

Start: 3227719

End: 3228723

Strand: Reverse

Name: ndpA [C]

Synonym: y2922

Alternate gene names: 22126799

Gene position: 3228723-3227719 (Counterclockwise)

Preceding gene: 22126809

Following gene: 22126798

Centisome position: 70.18

GC content: 48.46

Gene sequence:

>1005_bases
ATGAGTCTGGATATTGACCAGATAGCCTTACATCAGCTTATTAAACGTGATGAACAAACGCTTGATGTGGTGTTGCGGGA
TTCTTTGTTACCGACCAATGCGGTAGTTGAAGAGATGATGGCCGAACTGCACCGCGTTTACAGTGCCAAAAGTAAAGCTT
ACGGGCTATTTAATGAGCAGAGTGAACTGGCTGATGCACTGAAACGAAGCCGTAAGGGTGATGAAGATTTCCTTAGCTTT
AGCCGTGCAGCAACCGGTCGTTTACGTGACGAGCTAGCTAAGTATCCGTTTGCCGAGGGCGGGGTGGTGCTGTTTTGCCA
GTACCGTTATTTGGCCGTGGAGTATTTACTGATCTCTGTGCTAAGCAGCTGTCATAGTATGCGCGTAAACGAACAGCTCG
ATCTGAGTACTACTCATTATCTTGATATCAACCGCGCGGATATTGTCGCCCGGATTGATTTAACCGAGTGGGAAACCAAC
CCGGAATCAACGCGTTATCTGACTTTCCTTAAAGGGCGGGTAGGGCGAAAAGTGTCTGACTTCTTTATGGATTTTCTGTC
CGCTGCTGAAGGCTTAGATACCAAAGCGCAAAACCGGGGTTTATTGCAGGCGGTTGATGATTACTGCGCCGATGCCGAGT
TAGGCAAAAATGAGCGTCAGGCCTACCGTCAGCAGGTTTACAGCTATTGTAATGAGCAACTGCAAGCCGGTGAAGAGATT
GCCTTACAGGTGTTGGCTCAAGAGTTACCGAAACTGGGCGAAAAAGATTTCCAGCAATTTTCGGCTGAACAAGGTTATGC
ATTGGAAGAGAGTTTCCCGGCGGATCGAGGGACTTTGCGTCAGTTAACCAAGTTTGCGGGCAGTGGTGGCGGTTTGAGTA
TTAATTTTGATGCACTGCTGCTGGATGAGCGGATTTTCTGGGATGCGGCAACCGATACGCTGACCATTAAAGGTACTCCG
CCGAATTTGCGTGATCAATTACAGCGCCGTGCTGGCAGTAAGTAA

Upstream 100 bases:

>100_bases
AAGAATCTGTAGCCATTAATTGAACGATGCTGACGCTTTTGAGTTGCAGCTCTACCTTATCAGTGATTGAATACGCCCCT
AGCCAAAAGGAGTATTTATC

Downstream 100 bases:

>100_bases
TTGCCCACTTTGCGTATTTAGCCAATAAAAAACGCCGCATCAGCGGCGTTTTTTATTGTGCCCAGAAAACCCCCAGCTAG
GCTGGGGGTTCAGTAAAGCT

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQSELADALKRSRKGDEDFLSF
SRAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISVLSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETN
PESTRYLTFLKGRVGRKVSDFFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEI
ALQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALLLDERIFWDAATDTLTIKGTP
PNLRDQLQRRAGSK

Sequences:

>Translated_334_residues
MSLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQSELADALKRSRKGDEDFLSF
SRAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISVLSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETN
PESTRYLTFLKGRVGRKVSDFFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEI
ALQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALLLDERIFWDAATDTLTIKGTP
PNLRDQLQRRAGSK
>Mature_333_residues
SLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQSELADALKRSRKGDEDFLSFS
RAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISVLSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETNP
ESTRYLTFLKGRVGRKVSDFFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEIA
LQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALLLDERIFWDAATDTLTIKGTPP
NLRDQLQRRAGSK

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family

Homologues:

Organism=Escherichia coli, GI1788513, Length=330, Percent_Identity=79.0909090909091, Blast_Score=543, Evalue=1e-156,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDPA_YERP3 (A7FKA8)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001401686.1
- ProteinModelPortal:   A7FKA8
- STRING:   A7FKA8
- GeneID:   5387237
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_2721
- eggNOG:   COG3081
- HOGENOM:   HBG296787
- OMA:   TESEFGH
- ProtClustDB:   PRK00378
- BioCyc:   YPSE349747:YPSIP31758_2721-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00730
- InterPro:   IPR007358

Pfam domain/function: PF04245 NA37

EC number: NA

Molecular weight: Translated: 37741; Mature: 37610

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQ
CCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
SELADALKRSRKGDEDFLSFSRAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
LSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETNPESTRYLTFLKGRVGRKVSD
HHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECHHCCCCCCCHHHHHHHHHHHCCHHHH
FFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEI
HHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
ALQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALL
HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHEE
LDERIFWDAATDTLTIKGTPPNLRDQLQRRAGSK
ECCHHHEECCCCEEEEECCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SLDIDQIALHQLIKRDEQTLDVVLRDSLLPTNAVVEEMMAELHRVYSAKSKAYGLFNEQ
CCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
SELADALKRSRKGDEDFLSFSRAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLISV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
LSSCHSMRVNEQLDLSTTHYLDINRADIVARIDLTEWETNPESTRYLTFLKGRVGRKVSD
HHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECHHCCCCCCCHHHHHHHHHHHCCHHHH
FFMDFLSAAEGLDTKAQNRGLLQAVDDYCADAELGKNERQAYRQQVYSYCNEQLQAGEEI
HHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
ALQVLAQELPKLGEKDFQQFSAEQGYALEESFPADRGTLRQLTKFAGSGGGLSINFDALL
HHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHEE
LDERIFWDAATDTLTIKGTPPNLRDQLQRRAGSK
ECCHHHEECCCCEEEEECCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA