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The map label for this gene is hpaR [H]

Identifier: 22126429

GI number: 22126429

Start: 2810221

End: 2810697

Strand: Direct

Name: hpaR [H]

Synonym: y2548

Alternate gene names: 22126429

Gene position: 2810221-2810697 (Clockwise)

Preceding gene: 22126426

Following gene: 22126432

Centisome position: 61.08

GC content: 44.86

Gene sequence:

>477_bases
TTGTTACTTATGCATGAATCACTGACCATCGCATTATTGCAGGCTCGTGAAGCCGCTATGGCTTTTTTTCGGCCTATCTT
GAAAGCCAATCATCTGACTGAGCAGCAATGGCGGATCATTCGAGTGCTCGCGGATAATCGCTCAATTGATTTTCATGGGC
TGGCCCGCCAAACCTGTATTTTACGTCCAAGCCTAACGGGGATTTTGACGCGAATGGAGCGTAACAATTTGATTTTTCGC
CTCAAACCCGTCAACGATCAGCGCAAACTTTATGTCTCCTTAACTCAGGAGGGACAAAATTTGTATGACAACGCTCGGCC
ACAGGTTGAAGAAGGTTACAGGCTAATTGAGGCAGCATTTTCACCAGATAAAATGGCGCAACTCTCTTTACTGCTGGATG
AATTCATTACCGTGGGTAATAAACATCGGCAAGCGAATGAGATGTCAGAAAATGAGATGTTAGAAGATGAAGAGTGA

Upstream 100 bases:

>100_bases
TTTTTTGTGTAAGGAATCGCTGGTGTCTGGCCCATCTGTCCGTATACTAAAAACAGCAGAGCCTCCCTCTAGGAGAGGAT
AAATTACTAACGTCGAGTCG

Downstream 100 bases:

>100_bases
TGGGTTTACGGCGTCTTTGCGTTCTGTCTGTTACCTCCGTCGCGGGTACGTTGTCAATAACCTCAGGGGAGCCGAAGCGC
CCCTGAGGTTCCACTCTCTG

Product: homoprotocatechuate degradative operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MLLMHESLTIALLQAREAAMAFFRPILKANHLTEQQWRIIRVLADNRSIDFHGLARQTCILRPSLTGILTRMERNNLIFR
LKPVNDQRKLYVSLTQEGQNLYDNARPQVEEGYRLIEAAFSPDKMAQLSLLLDEFITVGNKHRQANEMSENEMLEDEE

Sequences:

>Translated_158_residues
MLLMHESLTIALLQAREAAMAFFRPILKANHLTEQQWRIIRVLADNRSIDFHGLARQTCILRPSLTGILTRMERNNLIFR
LKPVNDQRKLYVSLTQEGQNLYDNARPQVEEGYRLIEAAFSPDKMAQLSLLLDEFITVGNKHRQANEMSENEMLEDEE
>Mature_158_residues
MLLMHESLTIALLQAREAAMAFFRPILKANHLTEQQWRIIRVLADNRSIDFHGLARQTCILRPSLTGILTRMERNNLIFR
LKPVNDQRKLYVSLTQEGQNLYDNARPQVEEGYRLIEAAFSPDKMAQLSLLLDEFITVGNKHRQANEMSENEMLEDEE

Specific function: Repressor for the homoprotocatechuate catabolic pathway hpc operon [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012712
- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18381; Mature: 18381

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLMHESLTIALLQAREAAMAFFRPILKANHLTEQQWRIIRVLADNRSIDFHGLARQTCI
CEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCCCCCHHHHHEE
LRPSLTGILTRMERNNLIFRLKPVNDQRKLYVSLTQEGQNLYDNARPQVEEGYRLIEAAF
ECCHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCCCHHHCCCCCCHHHHHHHHHHHC
SPDKMAQLSLLLDEFITVGNKHRQANEMSENEMLEDEE
CCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCCCCCC
>Mature Secondary Structure
MLLMHESLTIALLQAREAAMAFFRPILKANHLTEQQWRIIRVLADNRSIDFHGLARQTCI
CEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCCCCCHHHHHEE
LRPSLTGILTRMERNNLIFRLKPVNDQRKLYVSLTQEGQNLYDNARPQVEEGYRLIEAAF
ECCHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCCCHHHCCCCCCHHHHHHHHHHHC
SPDKMAQLSLLLDEFITVGNKHRQANEMSENEMLEDEE
CCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8384293; 8550403 [H]