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The map label for this gene is ycfD [H]

Identifier: 22125686

GI number: 22125686

Start: 1972561

End: 1973736

Strand: Reverse

Name: ycfD [H]

Synonym: y1792

Alternate gene names: 22125686

Gene position: 1973736-1972561 (Counterclockwise)

Preceding gene: 22125687

Following gene: 22125678

Centisome position: 42.9

GC content: 48.3

Gene sequence:

>1176_bases
ATGGCGGGTATCCGTTATAATCTCAGGCAATTTCACCTTTATCCTGGAATAAACATGGATTACCAACTCGATCTCGATTG
GCCTGACTTTCTACAACGCTATTGGCAAAAGCGCCCTGTTATCCTCAAACGTGGCTTCAAAAATTTTATTGACCCACTCT
CACCAGATGAACTGGCCGGGTTAGCCATGGAAAATGAAGTCGATAGCCGCCTGGTAAGCCATGAAGATGGGCGTTGGCAT
GTTAGCCACGGGCCATTTGAAAGCTTCGATCATTTAGGTGAGAACAACTGGTCATTGTTAGTTCAGGCGGTAGACCATTG
GCATGAACCCGCGGCGGCGCTAATGCGCCCTTTCCGTCCACTCTCTGACTGGCGTATGGATGATTTAATGATCTCCTTCT
CCGTGCCTGGCGGTGGTGTTGGGCCTCATTTTGATCAATATGATGTTTTTATTATTCAGGGTTCAGGCCGTCGCCGCTGG
CGGGTGGGCGAAAAAACTGAAATGAAACAACATTGCCCACACCCAGATTTGCTCCAAGTGGGGCCTTTCGACGCTATCAT
TGATGAAGAAATGGAGCCTGGTGACATTCTTTATATTCCACCGGGCTTCCCTCATGAAGGCTATTCCCTTGAAAATGCGC
TGAATTACTCCGTTGGTTTCCGCGCCCCAAGTGGTCGAGAACTGGTCAGTGGTTTTGCGGATTATGTATTGGCTCGAGAA
CTGGGTAGCTATCGTTATAGCGATCCAGATTTACAGCTACGCGAGCATCCAGCCGAAGTATTACCGTCCGAAGTTGATAA
ACTGCGCACAATGATGCTGGATCTGGTCCAGCAACCTGAACATTTCCAAAACTGGTTTGGTGAATTTATTTCCCAATCAC
GCCATGAGTTGGATATTGCACCGCCGGAGCCGCCTTATCAGACCGGCGATATCTATGAACTATTGAAGCAAGGCGATGAA
TTACAACGCCTTAGTGGATTACGGGTTCTGCGGGTTGGTGATCGTTGCTTTGCTAATGGTGAGTTGATTGATACGCCACA
CTTACAGGCCGCCAATGCACTGTGCCAGCACTTTAGCGTGAATGCAGAGATGTTGGGTGATGCACTTGAAGACCCTTCTT
TCCTGGCAATGCTTGCAGCACTGGTCAATAGCGGTTATTGGTATTTTAACGATTGA

Upstream 100 bases:

>100_bases
CCGAAAGCCCCTTAGGGGGAGCCCGAATGATGGTGACGTTTGGTCAGCAACAAGATTGTCACGATGATTAATAATATTTG
CCAGTCAGCCCCTGATACTG

Downstream 100 bases:

>100_bases
TCAGCGGGTTATGGCAGTACGTGTTTATAACAGTATGTGTTTATAACAGTACGTATTTATTGCTGCTGACAAACCCCGAT
AACTCGATCTGAAACGGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MAGIRYNLRQFHLYPGINMDYQLDLDWPDFLQRYWQKRPVILKRGFKNFIDPLSPDELAGLAMENEVDSRLVSHEDGRWH
VSHGPFESFDHLGENNWSLLVQAVDHWHEPAAALMRPFRPLSDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGSGRRRW
RVGEKTEMKQHCPHPDLLQVGPFDAIIDEEMEPGDILYIPPGFPHEGYSLENALNYSVGFRAPSGRELVSGFADYVLARE
LGSYRYSDPDLQLREHPAEVLPSEVDKLRTMMLDLVQQPEHFQNWFGEFISQSRHELDIAPPEPPYQTGDIYELLKQGDE
LQRLSGLRVLRVGDRCFANGELIDTPHLQAANALCQHFSVNAEMLGDALEDPSFLAMLAALVNSGYWYFND

Sequences:

>Translated_391_residues
MAGIRYNLRQFHLYPGINMDYQLDLDWPDFLQRYWQKRPVILKRGFKNFIDPLSPDELAGLAMENEVDSRLVSHEDGRWH
VSHGPFESFDHLGENNWSLLVQAVDHWHEPAAALMRPFRPLSDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGSGRRRW
RVGEKTEMKQHCPHPDLLQVGPFDAIIDEEMEPGDILYIPPGFPHEGYSLENALNYSVGFRAPSGRELVSGFADYVLARE
LGSYRYSDPDLQLREHPAEVLPSEVDKLRTMMLDLVQQPEHFQNWFGEFISQSRHELDIAPPEPPYQTGDIYELLKQGDE
LQRLSGLRVLRVGDRCFANGELIDTPHLQAANALCQHFSVNAEMLGDALEDPSFLAMLAALVNSGYWYFND
>Mature_390_residues
AGIRYNLRQFHLYPGINMDYQLDLDWPDFLQRYWQKRPVILKRGFKNFIDPLSPDELAGLAMENEVDSRLVSHEDGRWHV
SHGPFESFDHLGENNWSLLVQAVDHWHEPAAALMRPFRPLSDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGSGRRRWR
VGEKTEMKQHCPHPDLLQVGPFDAIIDEEMEPGDILYIPPGFPHEGYSLENALNYSVGFRAPSGRELVSGFADYVLAREL
GSYRYSDPDLQLREHPAEVLPSEVDKLRTMMLDLVQQPEHFQNWFGEFISQSRHELDIAPPEPPYQTGDIYELLKQGDEL
QRLSGLRVLRVGDRCFANGELIDTPHLQAANALCQHFSVNAEMLGDALEDPSFLAMLAALVNSGYWYFND

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=371, Percent_Identity=79.2452830188679, Blast_Score=622, Evalue=1e-179,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 44884; Mature: 44753

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGIRYNLRQFHLYPGINMDYQLDLDWPDFLQRYWQKRPVILKRGFKNFIDPLSPDELAG
CCCCCCCCEEEEECCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHH
LAMENEVDSRLVSHEDGRWHVSHGPFESFDHLGENNWSLLVQAVDHWHEPAAALMRPFRP
HHHHHHHHHHHHCCCCCCEEECCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCC
LSDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGSGRRRWRVGEKTEMKQHCPHPDLLQV
CCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEECCCCHHHHHHHCCCCCCCCC
GPFDAIIDEEMEPGDILYIPPGFPHEGYSLENALNYSVGFRAPSGRELVSGFADYVLARE
CCCHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHCCCEECCCCCCHHHHHHHHHHHHHHH
LGSYRYSDPDLQLREHPAEVLPSEVDKLRTMMLDLVQQPEHFQNWFGEFISQSRHELDIA
HHCCCCCCCCCHHHHCCHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEECCC
PPEPPYQTGDIYELLKQGDELQRLSGLRVLRVGDRCFANGELIDTPHLQAANALCQHFSV
CCCCCCCCCHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCEECCCCHHHHHHHHHHHCC
NAEMLGDALEDPSFLAMLAALVNSGYWYFND
CHHHHHHHCCCHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure 
AGIRYNLRQFHLYPGINMDYQLDLDWPDFLQRYWQKRPVILKRGFKNFIDPLSPDELAG
CCCCCCCEEEEECCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHH
LAMENEVDSRLVSHEDGRWHVSHGPFESFDHLGENNWSLLVQAVDHWHEPAAALMRPFRP
HHHHHHHHHHHHCCCCCCEEECCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCC
LSDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGSGRRRWRVGEKTEMKQHCPHPDLLQV
CCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEECCCCHHHHHHHCCCCCCCCC
GPFDAIIDEEMEPGDILYIPPGFPHEGYSLENALNYSVGFRAPSGRELVSGFADYVLARE
CCCHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHCCCEECCCCCCHHHHHHHHHHHHHHH
LGSYRYSDPDLQLREHPAEVLPSEVDKLRTMMLDLVQQPEHFQNWFGEFISQSRHELDIA
HHCCCCCCCCCHHHHCCHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEECCC
PPEPPYQTGDIYELLKQGDELQRLSGLRVLRVGDRCFANGELIDTPHLQAANALCQHFSV
CCCCCCCCCHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCEECCCCHHHHHHHHHHHCC
NAEMLGDALEDPSFLAMLAALVNSGYWYFND
CHHHHHHHCCCHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]