| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
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The map label for this gene is idnO [H]
Identifier: 22125540
GI number: 22125540
Start: 1819141
End: 1819866
Strand: Direct
Name: idnO [H]
Synonym: y1645
Alternate gene names: 22125540
Gene position: 1819141-1819866 (Clockwise)
Preceding gene: 22125538
Following gene: 22125541
Centisome position: 39.54
GC content: 45.18
Gene sequence:
>726_bases TTGCTCATACCTGCACAGGGTATTGGATTCTTACTGGCAAAAGGGTTAGCTGAATTTGGCGCAGAGATTATCATTAACGA TATCACCGCAGAGCGTGCTGAAAAAGCCGTGGCTGAATTACGTGCTAGCGGCTTTATCGCCCATGCCGCCGCATTTAACG TGACGAACCATGATGAAGTCAATGAAGCTATCGAGAAAATAGAAAGCCATATTGGTGCTATCGACGTGTTAATTAATAAT GCCGGTATCCAACGCCGCCATGCCTTTACCGAATTCCCAGAAAAAGATTGGGATGATGTGATTGCTGTTAATCAAAAATC GGTATTTTTAGTTTCACAAGCCGTTGCCCGTTATATGGTTAAACGCCAACGTGGAAAAATTATTAATATCTGTTCAATGC AAAGTGAATTAGGCCGCGATACGATCACCCCGTATGCCGCCTCTAAAGGGGCAGTTAAAATGCTGACCCGTGGGATGTGT GTCGAACTGGCTCGCTACAATATTCAGGTTAACGGTATTGCACCGGGTTATTTCAAAACGGATATGACAAAAGCACTGGT CGATGATCAAGCCTTTACCGATTGGTTGTGTAAACGCACACCAGCCGCCCGTTGGGGAGATCCAGAAGAGCTCATTGGTG CAGCGGTTTATTTGTCATCCAAAGCCTCTGACTTTGTTAATGGTCATTTGCTGTTTGTTGATGGTGGCATGCTGGTAGCC GTTTAA
Upstream 100 bases:
>100_bases TCGTCGGGCGTTGGCCTTGGGTTGATGGCGAAGCCCCGATCACTTCACTGCCTTCTAAGAGAATATGAATATCAATGTAA TAGCGGTGTAATTCAGGGCG
Downstream 100 bases:
>100_bases TCCAGGGTTCAGTCGTGCTCCCCACATAATGGGGAGCAGAGGAAAATTATGTCTGGTAAATGCATTATTGTCATGGGTGT CTCTGGTACCGGCAAATCCT
Product: gluconate 5-dehydrogenase
Products: NA
Alternate protein names: 5-keto-D-gluconate 5-reductase [H]
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MLIPAQGIGFLLAKGLAEFGAEIIINDITAERAEKAVAELRASGFIAHAAAFNVTNHDEVNEAIEKIESHIGAIDVLINN AGIQRRHAFTEFPEKDWDDVIAVNQKSVFLVSQAVARYMVKRQRGKIINICSMQSELGRDTITPYAASKGAVKMLTRGMC VELARYNIQVNGIAPGYFKTDMTKALVDDQAFTDWLCKRTPAARWGDPEELIGAAVYLSSKASDFVNGHLLFVDGGMLVA V
Sequences:
>Translated_241_residues MLIPAQGIGFLLAKGLAEFGAEIIINDITAERAEKAVAELRASGFIAHAAAFNVTNHDEVNEAIEKIESHIGAIDVLINN AGIQRRHAFTEFPEKDWDDVIAVNQKSVFLVSQAVARYMVKRQRGKIINICSMQSELGRDTITPYAASKGAVKMLTRGMC VELARYNIQVNGIAPGYFKTDMTKALVDDQAFTDWLCKRTPAARWGDPEELIGAAVYLSSKASDFVNGHLLFVDGGMLVA V >Mature_241_residues MLIPAQGIGFLLAKGLAEFGAEIIINDITAERAEKAVAELRASGFIAHAAAFNVTNHDEVNEAIEKIESHIGAIDVLINN AGIQRRHAFTEFPEKDWDDVIAVNQKSVFLVSQAVARYMVKRQRGKIINICSMQSELGRDTITPYAASKGAVKMLTRGMC VELARYNIQVNGIAPGYFKTDMTKALVDDQAFTDWLCKRTPAARWGDPEELIGAAVYLSSKASDFVNGHLLFVDGGMLVA V
Specific function: Catalyzes a reversible reduction of 5-ketoglutanate to form D-gluconate. Dependent on NADP, almost inactive with NAD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=233, Percent_Identity=31.3304721030043, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI32483357, Length=231, Percent_Identity=28.5714285714286, Blast_Score=111, Evalue=6e-25, Organism=Homo sapiens, GI15277342, Length=242, Percent_Identity=32.6446280991736, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI5031737, Length=231, Percent_Identity=29.4372294372294, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI19923817, Length=239, Percent_Identity=30.1255230125523, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI7705925, Length=176, Percent_Identity=32.3863636363636, Blast_Score=99, Evalue=2e-21, Organism=Homo sapiens, GI126723750, Length=233, Percent_Identity=27.4678111587983, Blast_Score=94, Evalue=8e-20, Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=29.3333333333333, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI33667109, Length=182, Percent_Identity=31.3186813186813, Blast_Score=89, Evalue=2e-18, Organism=Homo sapiens, GI66933014, Length=227, Percent_Identity=28.6343612334802, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI4504505, Length=216, Percent_Identity=29.1666666666667, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI4503301, Length=227, Percent_Identity=24.2290748898678, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI10190704, Length=233, Percent_Identity=26.6094420600858, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4758504, Length=244, Percent_Identity=28.6885245901639, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI210032110, Length=183, Percent_Identity=24.5901639344262, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI126723191, Length=166, Percent_Identity=27.710843373494, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI20149619, Length=184, Percent_Identity=27.1739130434783, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI109715829, Length=190, Percent_Identity=27.8947368421053, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1790717, Length=237, Percent_Identity=80.5907172995781, Blast_Score=400, Evalue=1e-113, Organism=Escherichia coli, GI87082160, Length=234, Percent_Identity=40.1709401709402, Blast_Score=172, Evalue=2e-44, Organism=Escherichia coli, GI1789208, Length=233, Percent_Identity=41.2017167381974, Blast_Score=169, Evalue=2e-43, Organism=Escherichia coli, GI1787335, Length=234, Percent_Identity=35.8974358974359, Blast_Score=150, Evalue=6e-38, Organism=Escherichia coli, GI87082100, Length=238, Percent_Identity=34.0336134453782, Blast_Score=124, Evalue=4e-30, Organism=Escherichia coli, GI1788459, Length=236, Percent_Identity=34.7457627118644, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787905, Length=230, Percent_Identity=35.6521739130435, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI2367175, Length=238, Percent_Identity=30.2521008403361, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1786812, Length=239, Percent_Identity=25.1046025104602, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789057, Length=248, Percent_Identity=24.1935483870968, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI2367365, Length=232, Percent_Identity=26.7241379310345, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789378, Length=233, Percent_Identity=24.8927038626609, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25147288, Length=235, Percent_Identity=34.8936170212766, Blast_Score=124, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17555706, Length=234, Percent_Identity=34.1880341880342, Blast_Score=121, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17560676, Length=233, Percent_Identity=27.4678111587983, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI115534694, Length=233, Percent_Identity=32.618025751073, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17561402, Length=239, Percent_Identity=28.8702928870293, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI71994600, Length=186, Percent_Identity=31.7204301075269, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994604, Length=169, Percent_Identity=29.585798816568, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17561272, Length=233, Percent_Identity=26.1802575107296, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17568967, Length=181, Percent_Identity=31.4917127071823, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193203115, Length=180, Percent_Identity=25.5555555555556, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI193203117, Length=180, Percent_Identity=25.5555555555556, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=27.3076923076923, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17559104, Length=248, Percent_Identity=26.2096774193548, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17562904, Length=248, Percent_Identity=27.0161290322581, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17562906, Length=256, Percent_Identity=27.34375, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562990, Length=246, Percent_Identity=25.2032520325203, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17536651, Length=236, Percent_Identity=24.1525423728814, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17560150, Length=246, Percent_Identity=25.609756097561, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17564282, Length=181, Percent_Identity=24.8618784530387, Blast_Score=77, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17536025, Length=236, Percent_Identity=24.1525423728814, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17560220, Length=256, Percent_Identity=25.78125, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17562908, Length=258, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17551412, Length=252, Percent_Identity=28.1746031746032, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508895, Length=182, Percent_Identity=25.8241758241758, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17544670, Length=254, Percent_Identity=25.1968503937008, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193204405, Length=253, Percent_Identity=25.6916996047431, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17538486, Length=249, Percent_Identity=27.3092369477912, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17531453, Length=248, Percent_Identity=25.4032258064516, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17538182, Length=246, Percent_Identity=27.6422764227642, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17560332, Length=250, Percent_Identity=25.6, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17563726, Length=248, Percent_Identity=26.2096774193548, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193210355, Length=186, Percent_Identity=26.8817204301075, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI72000259, Length=248, Percent_Identity=25, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71997099, Length=215, Percent_Identity=28.8372093023256, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17565030, Length=255, Percent_Identity=28.6274509803922, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=25.7575757575758, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17507613, Length=198, Percent_Identity=25.7575757575758, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17538480, Length=250, Percent_Identity=25.2, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=234, Percent_Identity=29.9145299145299, Blast_Score=91, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6324126, Length=210, Percent_Identity=25.2380952380952, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24639444, Length=239, Percent_Identity=34.3096234309623, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI21355319, Length=232, Percent_Identity=28.8793103448276, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24643142, Length=234, Percent_Identity=30.7692307692308, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI28571526, Length=237, Percent_Identity=29.957805907173, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI23397609, Length=236, Percent_Identity=26.6949152542373, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21357041, Length=240, Percent_Identity=30, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24644337, Length=178, Percent_Identity=30.3370786516854, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24640492, Length=184, Percent_Identity=29.3478260869565, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24644339, Length=237, Percent_Identity=27.0042194092827, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI18859837, Length=199, Percent_Identity=30.1507537688442, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI17737361, Length=248, Percent_Identity=27.8225806451613, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI281364892, Length=185, Percent_Identity=29.1891891891892, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581726, Length=176, Percent_Identity=26.1363636363636, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21357673, Length=226, Percent_Identity=26.9911504424779, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24584748, Length=185, Percent_Identity=27.5675675675676, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI161076933, Length=185, Percent_Identity=27.5675675675676, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.69 [H]
Molecular weight: Translated: 26315; Mature: 26315
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIPAQGIGFLLAKGLAEFGAEIIINDITAERAEKAVAELRASGFIAHAAAFNVTNHDEV CCCCCCCHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHCCHHHHHHEECCCCHHHH NEAIEKIESHIGAIDVLINNAGIQRRHAFTEFPEKDWDDVIAVNQKSVFLVSQAVARYMV HHHHHHHHHHHCEEEEEEECCCCHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHH KRQRGKIINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARYNIQVNGIAPGYFKT HHHCCCEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHH DMTKALVDDQAFTDWLCKRTPAARWGDPEELIGAAVYLSSKASDFVNGHLLFVDGGMLVA HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEEECCEEEE V C >Mature Secondary Structure MLIPAQGIGFLLAKGLAEFGAEIIINDITAERAEKAVAELRASGFIAHAAAFNVTNHDEV CCCCCCCHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHCCHHHHHHEECCCCHHHH NEAIEKIESHIGAIDVLINNAGIQRRHAFTEFPEKDWDDVIAVNQKSVFLVSQAVARYMV HHHHHHHHHHHCEEEEEEECCCCHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHH KRQRGKIINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARYNIQVNGIAPGYFKT HHHCCCEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHH DMTKALVDDQAFTDWLCKRTPAARWGDPEELIGAAVYLSSKASDFVNGHLLFVDGGMLVA HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEEECCEEEE V C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]