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The map label for this gene is dedA [H]

Identifier: 22125495

GI number: 22125495

Start: 1769002

End: 1769691

Strand: Direct

Name: dedA [H]

Synonym: y1600

Alternate gene names: 22125495

Gene position: 1769002-1769691 (Clockwise)

Preceding gene: 22125494

Following gene: 161484834

Centisome position: 38.45

GC content: 45.22

Gene sequence:

>690_bases
GTGTGTTTATTCATTTCGAGAGTATTTATGGAATTTATACGTTTCGTCATAGATTTTATTTTGAATATTGATGTTCATCT
GGCTGAACTGGTTGCGCAATATGGGATATGGGTTTACGCCATTCTATTCCTGATTTTATTCTGTGAAACCGGTCTGGTGG
TGACACCGTTCCTGCCAGGGGACTCTCTGTTGTTTGTTGCAGGTGCCTTGGCCTCGTTGCCTTCCAATGATCTTAATGTC
CACACGATGGTGACCCTAATGGTGATTGCCGCCATTCTGGGGGATGCGATTAACTACACGATTGGCCGTATCTTCGGTGA
AAAGTTATTCAGCAATCCAGATTCTAAAATCTTCCGCCGCAGTTATCTGGATAAGACGCATCAGTTCTACGAGAAGCATG
GCGGTAAAGCGATTATTCTGGCGCGGTTTGTCCCGATCATTCGCACGTTTGCCCCATTCGTGGCCGGTATGGGGAAAATG
TCTTATCGCCACTTTGCTGCCTATAACGTGATTGGGGCGTTGGTATGGGTGCTGTTATTCACTTATGCTGGCTACCTGTT
TGGTAACGTACCTATCGTGCAGAATAATCTGAAGTTATTGATTGTGATCATTATCGTGGTGTCAATTTTGCCAGGCGTAT
TTGAAGTTTGGCGGCATCGGCGTGCTGCGGTACGTCAAAAAAATCAGTAA

Upstream 100 bases:

>100_bases
GCCAATTGTCAGGTATGTCGATGGCAAACTGAGGCGTCGCTTTGGGCTAAGGAATACCTAAGGAAATTCAGCTAATCTCA
CTTGCCTAACGAACGATTGG

Downstream 100 bases:

>100_bases
AAACGTTACATAAGCTGTGGGTTCACCAGTTTTTTATCTACACTGTCGAATCAATATGGTTTAATGAGTAACATTTGTGG
TCTGTTCCTGCAGACAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MCLFISRVFMEFIRFVIDFILNIDVHLAELVAQYGIWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPSNDLNV
HTMVTLMVIAAILGDAINYTIGRIFGEKLFSNPDSKIFRRSYLDKTHQFYEKHGGKAIILARFVPIIRTFAPFVAGMGKM
SYRHFAAYNVIGALVWVLLFTYAGYLFGNVPIVQNNLKLLIVIIIVVSILPGVFEVWRHRRAAVRQKNQ

Sequences:

>Translated_229_residues
MCLFISRVFMEFIRFVIDFILNIDVHLAELVAQYGIWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPSNDLNV
HTMVTLMVIAAILGDAINYTIGRIFGEKLFSNPDSKIFRRSYLDKTHQFYEKHGGKAIILARFVPIIRTFAPFVAGMGKM
SYRHFAAYNVIGALVWVLLFTYAGYLFGNVPIVQNNLKLLIVIIIVVSILPGVFEVWRHRRAAVRQKNQ
>Mature_229_residues
MCLFISRVFMEFIRFVIDFILNIDVHLAELVAQYGIWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPSNDLNV
HTMVTLMVIAAILGDAINYTIGRIFGEKLFSNPDSKIFRRSYLDKTHQFYEKHGGKAIILARFVPIIRTFAPFVAGMGKM
SYRHFAAYNVIGALVWVLLFTYAGYLFGNVPIVQNNLKLLIVIIIVVSILPGVFEVWRHRRAAVRQKNQ

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=210, Percent_Identity=86.1904761904762, Blast_Score=374, Evalue=1e-105,
Organism=Escherichia coli, GI1789481, Length=155, Percent_Identity=33.5483870967742, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789384, Length=192, Percent_Identity=28.6458333333333, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786252, Length=209, Percent_Identity=26.7942583732057, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25906; Mature: 25906

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLFISRVFMEFIRFVIDFILNIDVHLAELVAQYGIWVYAILFLILFCETGLVVTPFLPG
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
DSLLFVAGALASLPSNDLNVHTMVTLMVIAAILGDAINYTIGRIFGEKLFSNPDSKIFRR
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SYLDKTHQFYEKHGGKAIILARFVPIIRTFAPFVAGMGKMSYRHFAAYNVIGALVWVLLF
HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYAGYLFGNVPIVQNNLKLLIVIIIVVSILPGVFEVWRHRRAAVRQKNQ
HHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MCLFISRVFMEFIRFVIDFILNIDVHLAELVAQYGIWVYAILFLILFCETGLVVTPFLPG
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
DSLLFVAGALASLPSNDLNVHTMVTLMVIAAILGDAINYTIGRIFGEKLFSNPDSKIFRR
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SYLDKTHQFYEKHGGKAIILARFVPIIRTFAPFVAGMGKMSYRHFAAYNVIGALVWVLLF
HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYAGYLFGNVPIVQNNLKLLIVIIIVVSILPGVFEVWRHRRAAVRQKNQ
HHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]