Click here to switch to the map view.

The map label for this gene is 22125441

Identifier: 22125441

GI number: 22125441

Start: 1712028

End: 1712573

Strand: Direct

Name: 22125441

Synonym: y1545

Alternate gene names: NA

Gene position: 1712028-1712573 (Clockwise)

Preceding gene: 22125440

Following gene: 22125442

Centisome position: 37.21

GC content: 40.84

Gene sequence:

>546_bases
TTGTTTGAAATTAAGGCATATATGGTTAGCAAAAGTAATTCTCAAAAGTTTATCGCTCGAAACCGAGCGCCACGCGTGCA
GATTGAATACGATGTGGAAATATACGGTAGTGAAAAGAAGGTTGAATTACCTTTCGTTATGGGGGTATTAGCAGATTTAT
CCGGTAAACCTCTTGAGCCTTTACCTTCAGTCGCTGACAGAAAACTGTTAGATATCGATATTGATAATTTCGATGAGCGC
ATGAAAGCAATGAAACCACGTGTTGCATTCGCCGTGCTGAATACATTGACTGGGGAAGGCCAGTTAATGGTCGATATTAC
GTTTGAGAGTATGGATGATTTCTCTCCTGACGCTATCGCGAAAAAAGTTGATTCATTGTCTCAATTATTAGATGCCCGAA
CTCAACTTGCCAACTTGCAGACTTATATGGATGGTAAGGCTGGTGCTGAGGAATTAGTTATGAAATTGCTGAAAGACAAA
TCATTACTGACAACGCTTGCATCCGCACCGAAAGCAAAACAATCCGCTGTTGATACTCCACAGTAA

Upstream 100 bases:

>100_bases
AATTGGTTTACAAATAAGGGGGGGAGAACGTTTAGTTCTATATTTCCATATGATCTCTCCGTGGCGGTTCAGGGAGTTTA
TTTCCTGATGATTTTACAAT

Downstream 100 bases:

>100_bases
GATTGATTAAGAAGAGAAAAACGATGTCCACTCAAGACGCAAAAACTAAACAAGCTACAGTCGCCAGTGCGACGGAATAT
AGCGATTTTAATACATTACT

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; T6ss S; Cytoplasmic Protein SciH; Cytoplasmic Protein; Type VI Secretion System Core Protein; Conserved Protein; Type VI Secretion System Protein; Protein ImpB; Type VI Secretion

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MFEIKAYMVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDER
MKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDK
SLLTTLASAPKAKQSAVDTPQ

Sequences:

>Translated_181_residues
MFEIKAYMVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDER
MKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDK
SLLTTLASAPKAKQSAVDTPQ
>Mature_181_residues
MFEIKAYMVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDER
MKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDK
SLLTTLASAPKAKQSAVDTPQ

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20075; Mature: 20075

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEIKAYMVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEP
CEEEEEEEEECCCCCHHHHCCCCCEEEEEEEEEEECCCCEEEHHHHHHHHHHCCCCCCCC
LPSVADRKLLDIDIDNFDERMKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIA
CCCCCCCEEEEECCCCHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHH
KKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLASAPKAKQSAVDTP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHCCCCCC
Q
C
>Mature Secondary Structure
MFEIKAYMVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEP
CEEEEEEEEECCCCCHHHHCCCCCEEEEEEEEEEECCCCEEEHHHHHHHHHHCCCCCCCC
LPSVADRKLLDIDIDNFDERMKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIA
CCCCCCCEEEEECCCCHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHH
KKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLASAPKAKQSAVDTP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA