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The map label for this gene is cspG [H]

Identifier: 22125131

GI number: 22125131

Start: 1379286

End: 1379528

Strand: Direct

Name: cspG [H]

Synonym: y1230

Alternate gene names: 22125131

Gene position: 1379286-1379528 (Clockwise)

Preceding gene: 22125128

Following gene: 22125132

Centisome position: 29.98

GC content: 38.68

Gene sequence:

>243_bases
GTGGCACAAAATAATGAAGGAAATATATTTATGTCTAATAAAATGACTGGTTTGGTAAAATGGTTTGATGCTGGTAAAGG
TTTTGGTTTTATTTCTCCTGCAGATGGCAGCAAAGATGTATTTGTACATTTCTCTGCAATCCAGGGTAATGACTACAAAA
CTCTTGATGAAGGCCAGAACGTTGAGTTCAGCATCGAGCAAGGCCAAAAAGGCCCTTCAGCTGTAAACGTTGTAGCACTG
TAA

Upstream 100 bases:

>100_bases
GTTCCTAGTTAAAGCGATATTTTTTAGACATCACTTCTCCGACGAATTACCTTCTTTTGTGCCCCCATAAGTAACTCAAG
CAGACCTCAATTGCCATGTA

Downstream 100 bases:

>100_bases
TTCACATTACTGTTGTTAACGTTTAGCTGTAAATAGATTTAGAAGCCTCGTCTTTTGACGGGGTTTTTTTTATTATTTTT
TGGGGCGACAAAAATTGTAA

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MAQNNEGNIFMSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGPSAVNVVAL

Sequences:

>Translated_80_residues
MAQNNEGNIFMSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGPSAVNVVAL
>Mature_79_residues
AQNNEGNIFMSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGPSAVNVVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=77.1428571428572, Blast_Score=119, Evalue=5e-29,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=78.5714285714286, Blast_Score=114, Evalue=9e-28,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=77.9411764705882, Blast_Score=112, Evalue=5e-27,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=76.1194029850746, Blast_Score=108, Evalue=1e-25,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=72.8571428571428, Blast_Score=107, Evalue=1e-25,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=70.5882352941177, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=50, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=52.2388059701493, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=49.2537313432836, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8631; Mature: 8500

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQNNEGNIFMSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQN
CCCCCCCCEEECCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEEEECCCCEECCCCCC
VEFSIEQGQKGPSAVNVVAL
EEEEECCCCCCCCEEEEEEC
>Mature Secondary Structure 
AQNNEGNIFMSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQN
CCCCCCCEEECCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEEEECCCCEECCCCCC
VEFSIEQGQKGPSAVNVVAL
EEEEECCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA