| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
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The map label for this gene is ybbP [H]
Identifier: 22125005
GI number: 22125005
Start: 1239957
End: 1242398
Strand: Direct
Name: ybbP [H]
Synonym: y1101
Alternate gene names: 22125005
Gene position: 1239957-1242398 (Clockwise)
Preceding gene: 22125004
Following gene: 22125008
Centisome position: 26.95
GC content: 54.71
Gene sequence:
>2442_bases GTGGGAGGAGTCATGATTTGGCGCTGGTTTTGGCGTGAGTGGCGCGCGCCTTCACTGCTCATTGTCTGGCTGGCGCTCAC GCTGGCAGTAGCCTGCGTATTGGCGTTAGGGACTATCAGCGATCGAATGGAAAAAGGGCTGAGTCAGCAAAGCCGCGATT TTCTGGCCGGTGATCGGGTTCTCCGGGCGGCACACCCTGTTCCAGAGGCGTGGTTACAGGAAGCGAAGCAGCAGGGGCTG GCGGTTAGCCGCCAACTCTCATTTTTGACCATGACCTTTGCCGGTGATCGCCCACAGTTGGCTGAGGTGAAAGCCACTGA TCTGGCCTACCCGCTCTATGGGAAATTAGAAACCTTACCTAAGGGGGCAGAGTTGCAACCGGGCACGGTGCTGGTGGCAC CGCGATTACTGGCGCTACTGGGGGTTAAGGTTGGCGACATGTTGGATGTTGGCGATACCTCGCTAAAAATTATCGGTGAG ATTATTCAAGAACCCGATGCCGGTTTTAATCCGTTTCAAACCGCACCACACATTCTGATCAATCTGGCTGATGTCGAGAA AACCGGTGCGGTGCAACCGGGTAGCCGTTTGACTTACCGCTATATGTTTGCTGGCACCCCGGAGGCCGTGACGCAGTTTA GCGACTGGCTCACCCCGCAATTAGCACCAGAGCAGCGTTGGTATGGCTTGCAAGAATCCGGTGGCGCATTGGGGAAATCC CTGCAACGGGCGCAACAGTTCTTATTATTATCGGCGTTGCTGACCTTATTGCTGTCGATTGCTGCGGTCGCCGTCGCTAT GGGCCACTATTGCCGCAGCCGCTATGATCTGGTGGCTGTGCTGAAAACATTGGGGGCCGGGCGCGGTGCTCTGCGTCGAT TGATTATCGGCCAATGGCTATCCGTGCTGGCATTGGCCGGCCTCTGCGGCAGTGTCATTGGTCTCTTATTTGAGAGGCTA TTGGTTTGGTTATTAGCGCCGGTATTGCCCGCAGAGTTACCCACTGCCGGGCTATGGCCATGGGTGTGGTCAATGGGATC ATTAGTATTGATTTCGTTGCTGGTGGGGGTGAGGCCATATCGGCAATTACTCGCCACTCAGCCATTGCGGGTATTGCGCC GTGATGTGGCGGCCAATGTCTGGCCATTGCGCTATTTTATTCCAGTGATGCTGCTGGTGGTGATTGGGTTATTGGCATTG CTGATGGGGGGGAACTCCCTGCTATGGGCCATTCTGGGGGGCATGGTGGTATTGGCGTTGCTGCTCGGGGGGATCGGCTG GGGCAGCTTGCTGTTGCTGCGTCACCTAACGGTAACCCGTTTATCACTGCGGTTGGCCATTAATCGGCTTCTGCGCCAAC CGTGGATGACGCTGACTCAGCTTGCGGCATTTTCACTCTCCTTCATGTTGTTGGCGTTGTTACTAGTGCTACGTGGTGAT CTCTTGGAGAGATGGCAGCAGCAATTGCCACCGGATAGCCCGAACTATTTTTTGCTGAATATGACGCCCCAGCAGGTACC ACAAGTCACGGCATTTTTGGCTCAGCATCATATTCAACCCTCGACGTTCTACCCCATTGTGCGGGTCCGGTTGACGGAAA TTAATCAGCAACTGGCTACTGAGCGAGTGAGTGAAGACTCACCCGGTGGTGAGGCAGTTAACCGTGAGTTGAATTTAACC TGGCAGCAGGATTTACCCGCTCATAATGTATTGACCGCAGGGCAGTGGCCTCCTAAAGCCGATGAAGTCTCGATGGAGCA GGGGATTGCCGATCGGCTGGGGATTAAAATTGGCGATAAACTGACTTTCAGCGGTGATACTCAGTCATTTGGGGCGACGG TCAGCAGTATCCGTCAGGTTGATTGGGACAGTTTACGGCCTAATTTTTACTTTATTTTCCCACCCGGCGCATTGGATCAA CAACCACAAACCTGGTTGACCAGCTTCCGCTATCACGGTGATGGAGAGGCTTTGGTTCAGTTAAATCGCCAGTTCCCAAC ACTGAGTTTGTTAGACATCGGTGCGATGTTGAAACAGGTTGGTCAAGTGTTACAACAGGTCAGCCGGGCGCTGGAAGTGA TGGTGGTGTTGGTGATTCTGTGTGGCACCTTATTGCTACTGGCACAGGTACAAGTGGGGATGCGCCAGCGTAGGCAGGAG TTGGTGGTCTACCGCACGCTCGGAGCGAGTAAACGCTTACTTCGAGGCACATTATGGTGGGAATTTGCTTTACTGGGCTT GGTAGCGGGGCTGGCGGCGGCGATAGGTGCTGAAGCCGCGCTCTGGGCATTGCAGAGGTTAGTCTTTGATTTCCCATGGC AGCCAAACTGGATGATGTGGTGGATCTTACCCCTGGCGGGGGCGTCGTTGCTGTCAGTGTGCGGTGGCTGGCTAGGGGTT CGGCTATTACGAGGGCAGGCGCTATTTCGTCGTTACGAGTAG
Upstream 100 bases:
>100_bases CCCTAAACCGGGATTTCGCGACCACGTTGATTCTGGTCACACATGATGAACAACTGGCCGGTCGTTGTCAGCGTCGGTTG CGCCTGAGGGACGGTAAATT
Downstream 100 bases:
>100_bases TGGATTTTATTCGCGGGCAGCAGCAGAGGCCGCCCGCTTCTTGTTATAACTTATCTTGCGCCCAACGCAGTGCGTTCTGA TACTCCGCGGGTAGCAAAGG
Product: oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 813; Mature: 812
Protein sequence:
>813_residues MGGVMIWRWFWREWRAPSLLIVWLALTLAVACVLALGTISDRMEKGLSQQSRDFLAGDRVLRAAHPVPEAWLQEAKQQGL AVSRQLSFLTMTFAGDRPQLAEVKATDLAYPLYGKLETLPKGAELQPGTVLVAPRLLALLGVKVGDMLDVGDTSLKIIGE IIQEPDAGFNPFQTAPHILINLADVEKTGAVQPGSRLTYRYMFAGTPEAVTQFSDWLTPQLAPEQRWYGLQESGGALGKS LQRAQQFLLLSALLTLLLSIAAVAVAMGHYCRSRYDLVAVLKTLGAGRGALRRLIIGQWLSVLALAGLCGSVIGLLFERL LVWLLAPVLPAELPTAGLWPWVWSMGSLVLISLLVGVRPYRQLLATQPLRVLRRDVAANVWPLRYFIPVMLLVVIGLLAL LMGGNSLLWAILGGMVVLALLLGGIGWGSLLLLRHLTVTRLSLRLAINRLLRQPWMTLTQLAAFSLSFMLLALLLVLRGD LLERWQQQLPPDSPNYFLLNMTPQQVPQVTAFLAQHHIQPSTFYPIVRVRLTEINQQLATERVSEDSPGGEAVNRELNLT WQQDLPAHNVLTAGQWPPKADEVSMEQGIADRLGIKIGDKLTFSGDTQSFGATVSSIRQVDWDSLRPNFYFIFPPGALDQ QPQTWLTSFRYHGDGEALVQLNRQFPTLSLLDIGAMLKQVGQVLQQVSRALEVMVVLVILCGTLLLLAQVQVGMRQRRQE LVVYRTLGASKRLLRGTLWWEFALLGLVAGLAAAIGAEAALWALQRLVFDFPWQPNWMMWWILPLAGASLLSVCGGWLGV RLLRGQALFRRYE
Sequences:
>Translated_813_residues MGGVMIWRWFWREWRAPSLLIVWLALTLAVACVLALGTISDRMEKGLSQQSRDFLAGDRVLRAAHPVPEAWLQEAKQQGL AVSRQLSFLTMTFAGDRPQLAEVKATDLAYPLYGKLETLPKGAELQPGTVLVAPRLLALLGVKVGDMLDVGDTSLKIIGE IIQEPDAGFNPFQTAPHILINLADVEKTGAVQPGSRLTYRYMFAGTPEAVTQFSDWLTPQLAPEQRWYGLQESGGALGKS LQRAQQFLLLSALLTLLLSIAAVAVAMGHYCRSRYDLVAVLKTLGAGRGALRRLIIGQWLSVLALAGLCGSVIGLLFERL LVWLLAPVLPAELPTAGLWPWVWSMGSLVLISLLVGVRPYRQLLATQPLRVLRRDVAANVWPLRYFIPVMLLVVIGLLAL LMGGNSLLWAILGGMVVLALLLGGIGWGSLLLLRHLTVTRLSLRLAINRLLRQPWMTLTQLAAFSLSFMLLALLLVLRGD LLERWQQQLPPDSPNYFLLNMTPQQVPQVTAFLAQHHIQPSTFYPIVRVRLTEINQQLATERVSEDSPGGEAVNRELNLT WQQDLPAHNVLTAGQWPPKADEVSMEQGIADRLGIKIGDKLTFSGDTQSFGATVSSIRQVDWDSLRPNFYFIFPPGALDQ QPQTWLTSFRYHGDGEALVQLNRQFPTLSLLDIGAMLKQVGQVLQQVSRALEVMVVLVILCGTLLLLAQVQVGMRQRRQE LVVYRTLGASKRLLRGTLWWEFALLGLVAGLAAAIGAEAALWALQRLVFDFPWQPNWMMWWILPLAGASLLSVCGGWLGV RLLRGQALFRRYE >Mature_812_residues GGVMIWRWFWREWRAPSLLIVWLALTLAVACVLALGTISDRMEKGLSQQSRDFLAGDRVLRAAHPVPEAWLQEAKQQGLA VSRQLSFLTMTFAGDRPQLAEVKATDLAYPLYGKLETLPKGAELQPGTVLVAPRLLALLGVKVGDMLDVGDTSLKIIGEI IQEPDAGFNPFQTAPHILINLADVEKTGAVQPGSRLTYRYMFAGTPEAVTQFSDWLTPQLAPEQRWYGLQESGGALGKSL QRAQQFLLLSALLTLLLSIAAVAVAMGHYCRSRYDLVAVLKTLGAGRGALRRLIIGQWLSVLALAGLCGSVIGLLFERLL VWLLAPVLPAELPTAGLWPWVWSMGSLVLISLLVGVRPYRQLLATQPLRVLRRDVAANVWPLRYFIPVMLLVVIGLLALL MGGNSLLWAILGGMVVLALLLGGIGWGSLLLLRHLTVTRLSLRLAINRLLRQPWMTLTQLAAFSLSFMLLALLLVLRGDL LERWQQQLPPDSPNYFLLNMTPQQVPQVTAFLAQHHIQPSTFYPIVRVRLTEINQQLATERVSEDSPGGEAVNRELNLTW QQDLPAHNVLTAGQWPPKADEVSMEQGIADRLGIKIGDKLTFSGDTQSFGATVSSIRQVDWDSLRPNFYFIFPPGALDQQ PQTWLTSFRYHGDGEALVQLNRQFPTLSLLDIGAMLKQVGQVLQQVSRALEVMVVLVILCGTLLLLAQVQVGMRQRRQEL VVYRTLGASKRLLRGTLWWEFALLGLVAGLAAAIGAEAALWALQRLVFDFPWQPNWMMWWILPLAGASLLSVCGGWLGVR LLRGQALFRRYE
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=808, Percent_Identity=68.6881188118812, Blast_Score=1046, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 90137; Mature: 90005
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGVMIWRWFWREWRAPSLLIVWLALTLAVACVLALGTISDRMEKGLSQQSRDFLAGDRV CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRAAHPVPEAWLQEAKQQGLAVSRQLSFLTMTFAGDRPQLAEVKATDLAYPLYGKLETLP HHHCCCCCHHHHHHHHHCCCHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCCCCCHHCCC KGAELQPGTVLVAPRLLALLGVKVGDMLDVGDTSLKIIGEIIQEPDAGFNPFQTAPHILI CCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHEE NLADVEKTGAVQPGSRLTYRYMFAGTPEAVTQFSDWLTPQLAPEQRWYGLQESGGALGKS EHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHH LQRAQQFLLLSALLTLLLSIAAVAVAMGHYCRSRYDLVAVLKTLGAGRGALRRLIIGQWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH SVLALAGLCGSVIGLLFERLLVWLLAPVLPAELPTAGLWPWVWSMGSLVLISLLVGVRPY HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH RQLLATQPLRVLRRDVAANVWPLRYFIPVMLLVVIGLLALLMGGNSLLWAILGGMVVLAL HHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LLGGIGWGSLLLLRHLTVTRLSLRLAINRLLRQPWMTLTQLAAFSLSFMLLALLLVLRGD HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLERWQQQLPPDSPNYFLLNMTPQQVPQVTAFLAQHHIQPSTFYPIVRVRLTEINQQLAT HHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ERVSEDSPGGEAVNRELNLTWQQDLPAHNVLTAGQWPPKADEVSMEQGIADRLGIKIGDK HHHCCCCCCCHHHCCCCCEEECCCCCCCCCEECCCCCCCCCHHHHHHCHHHHCCCEECCE LTFSGDTQSFGATVSSIRQVDWDSLRPNFYFIFPPGALDQQPQTWLTSFRYHGDGEALVQ EEECCCCHHHHHHHHHHHHCCHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHH LNRQFPTLSLLDIGAMLKQVGQVLQQVSRALEVMVVLVILCGTLLLLAQVQVGMRQRRQE HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVVYRTLGASKRLLRGTLWWEFALLGLVAGLAAAIGAEAALWALQRLVFDFPWQPNWMMW HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEE WILPLAGASLLSVCGGWLGVRLLRGQALFRRYE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GGVMIWRWFWREWRAPSLLIVWLALTLAVACVLALGTISDRMEKGLSQQSRDFLAGDRV CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRAAHPVPEAWLQEAKQQGLAVSRQLSFLTMTFAGDRPQLAEVKATDLAYPLYGKLETLP HHHCCCCCHHHHHHHHHCCCHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCCCCCHHCCC KGAELQPGTVLVAPRLLALLGVKVGDMLDVGDTSLKIIGEIIQEPDAGFNPFQTAPHILI CCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHEE NLADVEKTGAVQPGSRLTYRYMFAGTPEAVTQFSDWLTPQLAPEQRWYGLQESGGALGKS EHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHH LQRAQQFLLLSALLTLLLSIAAVAVAMGHYCRSRYDLVAVLKTLGAGRGALRRLIIGQWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH SVLALAGLCGSVIGLLFERLLVWLLAPVLPAELPTAGLWPWVWSMGSLVLISLLVGVRPY HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH RQLLATQPLRVLRRDVAANVWPLRYFIPVMLLVVIGLLALLMGGNSLLWAILGGMVVLAL HHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LLGGIGWGSLLLLRHLTVTRLSLRLAINRLLRQPWMTLTQLAAFSLSFMLLALLLVLRGD HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLERWQQQLPPDSPNYFLLNMTPQQVPQVTAFLAQHHIQPSTFYPIVRVRLTEINQQLAT HHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ERVSEDSPGGEAVNRELNLTWQQDLPAHNVLTAGQWPPKADEVSMEQGIADRLGIKIGDK HHHCCCCCCCHHHCCCCCEEECCCCCCCCCEECCCCCCCCCHHHHHHCHHHHCCCEECCE LTFSGDTQSFGATVSSIRQVDWDSLRPNFYFIFPPGALDQQPQTWLTSFRYHGDGEALVQ EEECCCCHHHHHHHHHHHHCCHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHH LNRQFPTLSLLDIGAMLKQVGQVLQQVSRALEVMVVLVILCGTLLLLAQVQVGMRQRRQE HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVVYRTLGASKRLLRGTLWWEFALLGLVAGLAAAIGAEAALWALQRLVFDFPWQPNWMMW HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEE WILPLAGASLLSVCGGWLGVRLLRGQALFRRYE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]