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The map label for this gene is raiA [H]

Identifier: 22124818

GI number: 22124818

Start: 1017874

End: 1018338

Strand: Reverse

Name: raiA [H]

Synonym: y0910

Alternate gene names: 22124818

Gene position: 1018338-1017874 (Counterclockwise)

Preceding gene: 22124819

Following gene: 22124817

Centisome position: 22.13

GC content: 43.44

Gene sequence:

>465_bases
TTGCAAAAAGTGACAAAAAAAAGTGATCTCGATCATACATTCTACGGTAAAGCGAGGTATGCTGAAGTTATCCAAGACGG
AGTAGACAGAGAGGTAAGTCATATGACAGTTAATATTACCAGCAAGCAAATGGATATTACCCCGGCAATTCGTAAACACG
TTGAGGACCGTCTCACCAAACTGGATAAATGGCAGGCCCAGTTAATAAACCCACACATTGTACTGTCTAAAGAGCCACAA
GGTTTTGTTGCCGATGCCTCTATCAGTACACCAATGGGTCCCTTGGTCGCCAGCGCCAAGCATGATGATATGTATGCTGC
CATTAATGAACTGATCACCAAACTAGAACGCCAATTAAATAAAGTTCAACACAAAGGTGAAGCTCGTCGTGCGGCAAGCA
GCGTTAAAGACGCTAATTTGGAGTCTGTAGATGAAGAGGAAACAGAATCCGAACCGGAACAATAG

Upstream 100 bases:

>100_bases
TATATGCGGGCGATATAACCTATCGATAATGCGACATTATAACCAATGATTCAAGCCCTCAAAGCCTGTTCCTGAGGTTA
AATCACAGTTCCCACGAGCT

Downstream 100 bases:

>100_bases
CCAACTAAACCTTCTAATTTCGGTGTAACGCGCCTTCGGGCGCGTTTTTAATTGACATCAATTCAGACTGGCGGTTAATT
TAGCTGTGTTCATTTTTTAG

Product: yhbH sigma 54 modulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MQKVTKKSDLDHTFYGKARYAEVIQDGVDREVSHMTVNITSKQMDITPAIRKHVEDRLTKLDKWQAQLINPHIVLSKEPQ
GFVADASISTPMGPLVASAKHDDMYAAINELITKLERQLNKVQHKGEARRAASSVKDANLESVDEEETESEPEQ

Sequences:

>Translated_154_residues
MQKVTKKSDLDHTFYGKARYAEVIQDGVDREVSHMTVNITSKQMDITPAIRKHVEDRLTKLDKWQAQLINPHIVLSKEPQ
GFVADASISTPMGPLVASAKHDDMYAAINELITKLERQLNKVQHKGEARRAASSVKDANLESVDEEETESEPEQ
>Mature_154_residues
MQKVTKKSDLDHTFYGKARYAEVIQDGVDREVSHMTVNITSKQMDITPAIRKHVEDRLTKLDKWQAQLINPHIVLSKEPQ
GFVADASISTPMGPLVASAKHDDMYAAINELITKLERQLNKVQHKGEARRAASSVKDANLESVDEEETESEPEQ

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=113, Percent_Identity=79.646017699115, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1789595, Length=87, Percent_Identity=39.0804597701149, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 17338; Mature: 17338

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVTKKSDLDHTFYGKARYAEVIQDGVDREVSHMTVNITSKQMDITPAIRKHVEDRLTK
CCCCCCCCCCCCHHHCHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHH
LDKWQAQLINPHIVLSKEPQGFVADASISTPMGPLVASAKHDDMYAAINELITKLERQLN
HHHHHHHHCCCEEEEECCCCCEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
KVQHKGEARRAASSVKDANLESVDEEETESEPEQ
HHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MQKVTKKSDLDHTFYGKARYAEVIQDGVDREVSHMTVNITSKQMDITPAIRKHVEDRLTK
CCCCCCCCCCCCHHHCHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHH
LDKWQAQLINPHIVLSKEPQGFVADASISTPMGPLVASAKHDDMYAAINELITKLERQLN
HHHHHHHHCCCEEEEECCCCCEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
KVQHKGEARRAASSVKDANLESVDEEETESEPEQ
HHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]