Click here to switch to the map view.

The map label for this gene is rhaA [H]

Identifier: 22124500

GI number: 22124500

Start: 664061

End: 665323

Strand: Reverse

Name: rhaA [H]

Synonym: y0586

Alternate gene names: 22124500

Gene position: 665323-664061 (Counterclockwise)

Preceding gene: 22124501

Following gene: 22124499

Centisome position: 14.46

GC content: 52.81

Gene sequence:

>1263_bases
TTGCATATGACGAACTCTATTGAACAGGCCTGGGATCTGGCTAAACAGCGTTTTGCCGCTGTCGGCGTTGATGTTGATGC
CGCACTCACCCGTCTTGATACGCTACCGGTCTCCATGCACTGCTGGCAAGGCGATGATGTCACCGGTTTTGAGGATCCCG
ATGGCGTATTGACCGGCGGAATTCAGGCAACAGGAAACTATCCCGGCAAAGCGCGCAATGCGACCGAGTTGCGTTCTGAC
CTTGAATTGGCTTTGGCATTAATTCCTGGCCCTAAGCGCCTCAATTTACATGCTATTTATCTGGAATCTGACACGCCGGT
TGCGCGCAATAAAATTGAGCCGCGCCACTTTAGCCACTGGGTTGCATGGGCCAAAAAACACCAGTTGGGGCTGGATTTTA
ACCCCTCTTGCTTCTCTCACCCACTCAGCGCTGACGGCTTTACCTTGTCTCATGCTGATCCGGAAATCCGCCAGTTCTGG
ATTGAACACTGTCAGGCGAGTCGCCGGGTTTCTGCCTATTTTGGTGAACAGTTAGGAACGCCGTCGGTCATGAATATCTG
GATCCCCGATGGCATGAAAGACACACCGATTGATCGCCTTGCCCCCCGTCAGCGCCTGCTATCGGCTCTGGATGAAGTCA
TCAGCGAGAAGTTAAACCCGGCTCACCATATTGATGCGGTTGAGAGCAAATTGTTTGGTATTGGTGCTGAAAGTTACACC
GTAGGCTCTAACGAGTTTTATATGGGTTATGCCGCCAGCCGCCAAACGGCGCTGTGTCTGGATGCGGGTCACTTCCATCC
AACCGAGGTGATTTCCGACAAAATATCCAGCGCCATGCTGTATGTCCCACGCCTGCTATTGCATGTCAGCCGTCCGGTTC
GCTGGGACAGTGACCATGTGGTGTTACTGGATGATGAAACCCAAGCCATCGCCAGCGAAATTATTCGTCACAACCTGTTT
GATCGGGTTCACATCGGCCTCGACTTCTTTGATGCCTCCATTAACCGGATTGCCGCTTGGGTTATTGGCACCCGCAACAT
GAAAAAGGCCCTGTTACGCGCCTTACTGGAGCCGACCGACAGGCTACGTCAACTGGAATTACGCGGTGATTACACTGCAC
GGCTGGCGCTGCTGGAAGAACAAAAATCCCTGCCATGGCAAGCCATCTGGGAAGGTTACTGCCAGCGCAATGACGTACCG
GTTGATGCCCGCTGGCTTGACGCAGTACGTGAATATGAACAACAGATTCTCAGCCAACGTTAA

Upstream 100 bases:

>100_bases
CGAATAACTTCCCATTGCACCATTTATCCCCTCACGACAATTCGGACTTTGCTGCCCATTGGCTGCAATTCCAGTCACTG
AGTCAATTACCTAAGGAACT

Downstream 100 bases:

>100_bases
GGACTCGTAATTATGCAAGCTATTCTATCTTCCTGGTTTATTCAGGGAATGATTAAAGCCACCAGTGATATGTGGCACAA
AGGGTGGGATGAACGTAACG

Product: L-rhamnose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MHMTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSD
LELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFW
IEHCQASRRVSAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYT
VGSNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLF
DRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVP
VDARWLDAVREYEQQILSQR

Sequences:

>Translated_420_residues
MHMTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSD
LELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFW
IEHCQASRRVSAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYT
VGSNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLF
DRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVP
VDARWLDAVREYEQQILSQR
>Mature_420_residues
MHMTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSD
LELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFW
IEHCQASRRVSAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYT
VGSNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLF
DRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVP
VDARWLDAVREYEQQILSQR

Specific function: Metabolism of L-rhamnose; first step. [C]

COG id: COG4806

COG function: function code G; L-rhamnose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI48994990, Length=418, Percent_Identity=85.4066985645933, Blast_Score=758, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009308
- InterPro:   IPR013022 [H]

Pfam domain/function: PF06134 RhaA [H]

EC number: =5.3.1.14 [H]

Molecular weight: Translated: 47429; Mature: 47429

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGG
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECC
IQATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHW
EEECCCCCCCCCCHHHHHHHHHEEEEECCCCCEEEEEEEEEECCCCHHHCCCCCHHHHHH
VAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRVSAYFGEQLGT
HHHHHHHCCCCCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYT
CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEE
VGSNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHV
ECCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
VLLDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTD
EEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHH
RLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR
HHHEEHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHMTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGG
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECC
IQATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHW
EEECCCCCCCCCCHHHHHHHHHEEEEECCCCCEEEEEEEEEECCCCHHHCCCCCHHHHHH
VAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRVSAYFGEQLGT
HHHHHHHCCCCCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYT
CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEE
VGSNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHV
ECCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
VLLDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTD
EEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHH
RLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR
HHHEEHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA