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The map label for this gene is thiH [H]

Identifier: 22124402

GI number: 22124402

Start: 549468

End: 550613

Strand: Reverse

Name: thiH [H]

Synonym: y0487

Alternate gene names: 22124402

Gene position: 550613-549468 (Counterclockwise)

Preceding gene: 161484890

Following gene: 22124401

Centisome position: 11.97

GC content: 50.17

Gene sequence:

>1146_bases
TTGAGGAGCAAGACCATGTCTGAAGACTTCAACCAGCGCTGGCAGCAGTTGGACTGGGACGATATCTCCTTAACCATCAA
CAGTAAAAAACCCGCAGACGTTGAACGGGCGCTGAATGCCATCAAGCCCACCCGCGAAGATTTGATGGCACTCATTTCCC
CTGCCGCACTGGCTTACCTGGAGCCAATGGCACAGAAGGCCCAACAACTGACACGCCAACGTTTTGGAAATACAGTCAGT
TTTTATGTGCCGCTTTATCTCTCCAATTTGTGTGCTAATGATTGCACTTACTGCGGCTTCTCGATGAGTAATCGCATCAA
ACGCAAGACATTGGATGAAGCAGAGATTATCCGAGAGTGTGAAGCCATCAAAGCGCTGGGTTTTGAGCACTTGCTGCTGG
TCACTGGGGAGCACCAAACAAAAGTAGGAATGGACTATTTTCGCCGCCACCTCCCTACGATCCGCAGTAGATTCAGTTCG
CTAATGATGGAGGTTCAGCCATTGGCAGAAGATGAATATACTGAATTAAAGGCGCTGGGATTAGATGGCGTGATGGTTTA
TCAGGAAACCTATCACCCAGCGACGTATCAGCAGCACCATTTGCGGGGTCATAAGCAGGATTTTCACTGGCGGTTGGCAA
CCCCAGATCGTTTGGGCCGTGCGGGGATCGACAAGATCGGATTAGGTGCCTTGATTGGCTTGTCCAATAGTTGGCGTACC
GACTGTTATATGCTGGCGGAGCATCTGTTTTATTTGCAACAAACTTACTGGCAAACCCGTTATTCGATCTCTTTCCCTCG
CTTGCGTCCGTGCGCTGGGGGGATCGAACCCGCATCCATCATGAGTGAGCCACAACTGCTGCAACTGATCTGCGCTTTTC
GCTTATTTGCACCTGATGTGGAACTGTCGTTATCTACTCGAGAATCGCCTTTCTTCCGCGATAATGTCATTCCGGTTGCT
ATCAATAATGTCAGTGCCGGGTCAAAAACCCAACCGGGGGGTTATGCCGATGATCATCCCGAACTGGAACAATTTGCGCC
CCATGATAACCGCTCCCCGGAACAGGTCGCACAAGCGTTAACAAAAGCAGGCTTACAGCCCGTGTGGAAAGATTGGGATA
GCCATTTAGGCCGTTCATTGCGATAA

Upstream 100 bases:

>100_bases
TTGGCTGGGCTTGGCGCTTCACCGTTCAATCCTTCACAACCTGATACATTACAACTACGGGCCACCGCCACCAGCCCGCT
AACGGGTTTCCTCAGCCAAC

Downstream 100 bases:

>100_bases
GCGAGTTCACGTAATATTGAAAAACCGCCCGAAGGCGTAATATCAGTGAGTTACACCACTGGCTGGCATGACACTCTTGG
CGGTTTGTTTTAACCAGAGA

Product: thiamine biosynthesis protein ThiH

Products: 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate; 4-hydroxy-benzyl-alcohol; C1 of tyrosine; ThiS protein [C]

Alternate protein names: Dehydroglycine synthase; Tyrosine lyase [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MRSKTMSEDFNQRWQQLDWDDISLTINSKKPADVERALNAIKPTREDLMALISPAALAYLEPMAQKAQQLTRQRFGNTVS
FYVPLYLSNLCANDCTYCGFSMSNRIKRKTLDEAEIIRECEAIKALGFEHLLLVTGEHQTKVGMDYFRRHLPTIRSRFSS
LMMEVQPLAEDEYTELKALGLDGVMVYQETYHPATYQQHHLRGHKQDFHWRLATPDRLGRAGIDKIGLGALIGLSNSWRT
DCYMLAEHLFYLQQTYWQTRYSISFPRLRPCAGGIEPASIMSEPQLLQLICAFRLFAPDVELSLSTRESPFFRDNVIPVA
INNVSAGSKTQPGGYADDHPELEQFAPHDNRSPEQVAQALTKAGLQPVWKDWDSHLGRSLR

Sequences:

>Translated_381_residues
MRSKTMSEDFNQRWQQLDWDDISLTINSKKPADVERALNAIKPTREDLMALISPAALAYLEPMAQKAQQLTRQRFGNTVS
FYVPLYLSNLCANDCTYCGFSMSNRIKRKTLDEAEIIRECEAIKALGFEHLLLVTGEHQTKVGMDYFRRHLPTIRSRFSS
LMMEVQPLAEDEYTELKALGLDGVMVYQETYHPATYQQHHLRGHKQDFHWRLATPDRLGRAGIDKIGLGALIGLSNSWRT
DCYMLAEHLFYLQQTYWQTRYSISFPRLRPCAGGIEPASIMSEPQLLQLICAFRLFAPDVELSLSTRESPFFRDNVIPVA
INNVSAGSKTQPGGYADDHPELEQFAPHDNRSPEQVAQALTKAGLQPVWKDWDSHLGRSLR
>Mature_381_residues
MRSKTMSEDFNQRWQQLDWDDISLTINSKKPADVERALNAIKPTREDLMALISPAALAYLEPMAQKAQQLTRQRFGNTVS
FYVPLYLSNLCANDCTYCGFSMSNRIKRKTLDEAEIIRECEAIKALGFEHLLLVTGEHQTKVGMDYFRRHLPTIRSRFSS
LMMEVQPLAEDEYTELKALGLDGVMVYQETYHPATYQQHHLRGHKQDFHWRLATPDRLGRAGIDKIGLGALIGLSNSWRT
DCYMLAEHLFYLQQTYWQTRYSISFPRLRPCAGGIEPASIMSEPQLLQLICAFRLFAPDVELSLSTRESPFFRDNVIPVA
INNVSAGSKTQPGGYADDHPELEQFAPHDNRSPEQVAQALTKAGLQPVWKDWDSHLGRSLR

Specific function: Catalyzes the radical-mediated cleavage of tyrosine to 2-iminoacetate and 4-cresol [H]

COG id: COG1060

COG function: function code HR; Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. ThiH family [H]

Homologues:

Organism=Escherichia coli, GI1790423, Length=370, Percent_Identity=79.7297297297297, Blast_Score=632, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR010722
- InterPro:   IPR007197
- InterPro:   IPR012726 [H]

Pfam domain/function: PF06968 BATS; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 43543; Mature: 43543

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSKTMSEDFNQRWQQLDWDDISLTINSKKPADVERALNAIKPTREDLMALISPAALAYL
CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EPMAQKAQQLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKRKTLDEAEIIREC
HHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHH
EAIKALGFEHLLLVTGEHQTKVGMDYFRRHLPTIRSRFSSLMMEVQPLAEDEYTELKALG
HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
LDGVMVYQETYHPATYQQHHLRGHKQDFHWRLATPDRLGRAGIDKIGLGALIGLSNSWRT
CCCEEEEECCCCCCHHHHHHHCCCCCCCEEEECCHHHHCCCCCCHHCCHHHEECCCCCCH
DCYMLAEHLFYLQQTYWQTRYSISFPRLRPCAGGIEPASIMSEPQLLQLICAFRLFAPDV
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC
ELSLSTRESPFFRDNVIPVAINNVSAGSKTQPGGYADDHPELEQFAPHDNRSPEQVAQAL
EEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHH
TKAGLQPVWKDWDSHLGRSLR
HHHCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRSKTMSEDFNQRWQQLDWDDISLTINSKKPADVERALNAIKPTREDLMALISPAALAYL
CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EPMAQKAQQLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKRKTLDEAEIIREC
HHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHH
EAIKALGFEHLLLVTGEHQTKVGMDYFRRHLPTIRSRFSSLMMEVQPLAEDEYTELKALG
HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
LDGVMVYQETYHPATYQQHHLRGHKQDFHWRLATPDRLGRAGIDKIGLGALIGLSNSWRT
CCCEEEEECCCCCCHHHHHHHCCCCCCCEEEECCHHHHCCCCCCHHCCHHHEECCCCCCH
DCYMLAEHLFYLQQTYWQTRYSISFPRLRPCAGGIEPASIMSEPQLLQLICAFRLFAPDV
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC
ELSLSTRESPFFRDNVIPVAINNVSAGSKTQPGGYADDHPELEQFAPHDNRSPEQVAQAL
EEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHH
TKAGLQPVWKDWDSHLGRSLR
HHHCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxyxylulose-5-phosphate; ThiS-COSH; L-tyrosine [C]

Specific reaction: deoxyxylulose-5-phosphate + ThiS-COSH + L-tyrosine = 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate + 4-hydroxy-benzyl-alcohol + C1 of tyrosine + ThiS protein [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8432721; 8265357; 9278503; 10082377 [H]