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The map label for this gene is tatD [H]

Identifier: 22124373

GI number: 22124373

Start: 508898

End: 509233

Strand: Direct

Name: tatD [H]

Synonym: y0458

Alternate gene names: 22124373

Gene position: 508898-509233 (Clockwise)

Preceding gene: 22124372

Following gene: 22124374

Centisome position: 11.06

GC content: 48.81

Gene sequence:

>336_bases
GTGGATCACTTTTCATCCGTCGTTGACAGTGATGAGTTAGATGCCTGTTTAGCATTGGGTTTATCTATAGGTATCACGGG
TTGGGTTTGCGATGAGCGTCGTGGCCTTGATCTTAGAGCTTTGCTCCCGCGTATTCCTGTTCAGCAGCTATTGTTGGAAA
CTGATGCTCCCTATTTATTGCCAAGGGATTTGAATCCTAAACCTGCATCACGTCGCAATGAACCCTGTTTTCTGCCCCAT
ATCGTCCAGCAGGTTGCAGCCTGGCGACAAGAAGACCCTAATTGGCTAGGACAGAAAACTGATGAAAACGCCCGCCGGGT
TTTCCGGCTGGTTTGA

Upstream 100 bases:

>100_bases
AAAGCTATCGACTCAGACAGAAACGAAAGGCCGGGGTTATAGCAGAAGCTAATCCTGAGTAAAACGGTGGATCAATATTG
GGCCGTTGGTGGAGATATAA

Downstream 100 bases:

>100_bases
GTTAGGAGAACAATATGAGCTATGCATTTCCGGGCACCTTTCCTGGTCGCCGTATGCGCCGTGTACGCTGTCATGATTTC
AGCCGCCGTTTGGTTGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: DNase tatD [H]

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MDHFSSVVDSDELDACLALGLSIGITGWVCDERRGLDLRALLPRIPVQQLLLETDAPYLLPRDLNPKPASRRNEPCFLPH
IVQQVAAWRQEDPNWLGQKTDENARRVFRLV

Sequences:

>Translated_111_residues
MDHFSSVVDSDELDACLALGLSIGITGWVCDERRGLDLRALLPRIPVQQLLLETDAPYLLPRDLNPKPASRRNEPCFLPH
IVQQVAAWRQEDPNWLGQKTDENARRVFRLV
>Mature_111_residues
MDHFSSVVDSDELDACLALGLSIGITGWVCDERRGLDLRALLPRIPVQQLLLETDAPYLLPRDLNPKPASRRNEPCFLPH
IVQQVAAWRQEDPNWLGQKTDENARRVFRLV

Specific function: Shows DNase activity [H]

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Escherichia coli, GI48994985, Length=101, Percent_Identity=64.3564356435644, Blast_Score=145, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI17559024, Length=120, Percent_Identity=32.5, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 12658; Mature: 12658

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS01091 TATD_3 ; PS00387 PPASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHFSSVVDSDELDACLALGLSIGITGWVCDERRGLDLRALLPRIPVQQLLLETDAPYLL
CCCHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCCCEEC
PRDLNPKPASRRNEPCFLPHIVQQVAAWRQEDPNWLGQKTDENARRVFRLV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MDHFSSVVDSDELDACLALGLSIGITGWVCDERRGLDLRALLPRIPVQQLLLETDAPYLL
CCCHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCCCEEC
PRDLNPKPASRRNEPCFLPHIVQQVAAWRQEDPNWLGQKTDENARRVFRLV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Mg [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1584020; 9649434; 1379743; 9278503; 10747959 [H]