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The map label for this gene is ecpD [H]

Identifier: 22124267

GI number: 22124267

Start: 391813

End: 392568

Strand: Reverse

Name: ecpD [H]

Synonym: y0351

Alternate gene names: 22124267

Gene position: 392568-391813 (Counterclockwise)

Preceding gene: 22124268

Following gene: 22124266

Centisome position: 8.53

GC content: 42.33

Gene sequence:

>756_bases
ATGACTTCAGAAGGTACGCTCATCATGCTTAGTATATATGCCCGCCACTATCATTATCTGTTTGTAACTTTATTAGTGGC
TATGAGTCTGTCTTTTGCTAATGCCAGTGTCGTGATGACAGGGAGTCGCATCATATATCCTGCGGCGGCAAGCGAGCACA
GCATACAGTTAACCAATAATGACAATTTCCCTAATGCTGTTCAGGTGTGGTTAGACAGTGGCGATGAAAAATCGACACCA
GAAACAGGCAAAGCCCCCTTTATAGTGACTCCACCGTTCTTTCGTATTGAAGCAAATTCTGGCCAAACATTACGGTTAAA
ATATACGGGAAGTGGCCTTCCTACAGATAGGGAATCCGTATTTTATCTTAACTTTTTACAGATCCCTCCCGTCAATAAAG
TAGAGAAAGATAACAAGATGTTAGTGCTGTTGCGTAACCGCATTAAAGTATTTTATCGTCCCGAGAGTATTATCGGCCGT
GTTGACCAAGTCTCTACCGCATTGACTTTTAGTCTACGAAAACAAGGAACTAACCTTGTTTTGACAGGAAAAAACCCAAC
TGGATTCTATGCCACAATTGCCAGTGGTGAAATCGTGAGTGGGAGCATAAAACTTAAAGTAAAATCAAATATGATCGCGC
CTATGTCTCAAGTTGAGTGGGTGATCCCAAATGCATCCGTATCCTCGTCAGCAACGATTAACTTTCTGATCATGAATGAT
TTCGGCGGGCAAGATGCCGGTAGCTATCGTATTTAG

Upstream 100 bases:

>100_bases
TGGGCAATCAACACCAGGGTCTGTCATTGCATCTGTACAGTATGCCGTTTCTTACTTGTAATAAATGTATTTATTACCGG
GTGGTATACCCACTCGGTAA

Downstream 100 bases:

>100_bases
CAGTAACTTTCCGGTAAAGGAATATTTATGGTGCAGGCACGGGTCATTCTGAAAAAAAATTTCTCAGGCCGTAGGAAAGC
ATTAACATTATGTATAACTT

Product: chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTSEGTLIMLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQVWLDSGDEKSTP
ETGKAPFIVTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQIPPVNKVEKDNKMLVLLRNRIKVFYRPESIIGR
VDQVSTALTFSLRKQGTNLVLTGKNPTGFYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNASVSSSATINFLIMND
FGGQDAGSYRI

Sequences:

>Translated_251_residues
MTSEGTLIMLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQVWLDSGDEKSTP
ETGKAPFIVTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQIPPVNKVEKDNKMLVLLRNRIKVFYRPESIIGR
VDQVSTALTFSLRKQGTNLVLTGKNPTGFYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNASVSSSATINFLIMND
FGGQDAGSYRI
>Mature_250_residues
TSEGTLIMLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQVWLDSGDEKSTPE
TGKAPFIVTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQIPPVNKVEKDNKMLVLLRNRIKVFYRPESIIGRV
DQVSTALTFSLRKQGTNLVLTGKNPTGFYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNASVSSSATINFLIMNDF
GGQDAGSYRI

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=237, Percent_Identity=37.9746835443038, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1788428, Length=197, Percent_Identity=37.5634517766497, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789532, Length=235, Percent_Identity=31.4893617021277, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790771, Length=227, Percent_Identity=31.2775330396476, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1787171, Length=227, Percent_Identity=25.1101321585903, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786936, Length=226, Percent_Identity=29.646017699115, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786743, Length=250, Percent_Identity=30, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082203, Length=227, Percent_Identity=29.5154185022026, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788677, Length=215, Percent_Identity=29.7674418604651, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081806, Length=258, Percent_Identity=29.8449612403101, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27642; Mature: 27511

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSEGTLIMLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNN
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCEEEEECC
DNFPNAVQVWLDSGDEKSTPETGKAPFIVTPPFFRIEANSGQTLRLKYTGSGLPTDRESV
CCCCCEEEEEECCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCEE
FYLNFLQIPPVNKVEKDNKMLVLLRNRIKVFYRPESIIGRVDQVSTALTFSLRKQGTNLV
EEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCHHHHCCHHHHHHEEEEEECCCCCEEE
LTGKNPTGFYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNASVSSSATINFLIMND
EECCCCCCEEEEEECCEEEECEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEEC
FGGQDAGSYRI
CCCCCCCCCCC
>Mature Secondary Structure 
TSEGTLIMLSIYARHYHYLFVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNN
CCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCEEEEECC
DNFPNAVQVWLDSGDEKSTPETGKAPFIVTPPFFRIEANSGQTLRLKYTGSGLPTDRESV
CCCCCEEEEEECCCCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCCEE
FYLNFLQIPPVNKVEKDNKMLVLLRNRIKVFYRPESIIGRVDQVSTALTFSLRKQGTNLV
EEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCHHHHCCHHHHHHEEEEEECCCCCEEE
LTGKNPTGFYATIASGEIVSGSIKLKVKSNMIAPMSQVEWVIPNASVSSSATINFLIMND
EECCCCCCEEEEEECCEEEECEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEEC
FGGQDAGSYRI
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]