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The map label for this gene is rfaC [H]

Identifier: 22124005

GI number: 22124005

Start: 93442

End: 94431

Strand: Direct

Name: rfaC [H]

Synonym: y0085

Alternate gene names: 22124005

Gene position: 93442-94431 (Clockwise)

Preceding gene: 161484920

Following gene: 22124006

Centisome position: 2.03

GC content: 50.71

Gene sequence:

>990_bases
ATGCTCAGTCAAAGGGGGCGATTAATGCACGTATTAATCGTTAAAACCTCGTCAATGGGCGATGTTTTACATACCTTACC
CGCGCTGACGGATGCCATGAATGCCATACCCGGTATTCGCTTCGATTGGGTGGTAGAAGAAGGGTTCAGCCAAATCCCCA
GTTGGCATCCGGCGGTGGATAAAGTGATCCCGGTGGCCATCCGCCGTTGGCGTAAAAACTGGTTTGGTAGTGATACCCGG
CAGGAACGCTGTGATTTTAAGCGTGTGGTACAACAACGCAGTTATGATCGGGTCATTGATGCCCAAGGGTTGATTAAAAG
CGCCGCGCTGATAACCCGGATTGCGAAAGGCACGAAGCACGGGCCGGATTGTAAAAGTGCCCGTGAGCCGTTTGCCAGTT
GGTTTTATAACTGCCGCCATGAAATTGATACCAAACAACATGCCGTAGAACGTATACGTCAACTGTTTGCTAAAAGCCTC
GGCTATGATAAACCGGAAAGTTATGGCGACTATGCCATCGCACAACGCTTTTTAAATCAGTTACCGGCCGATGCAGGTCA
GTACTTGGTTTTCCTACATGCGACGACCCGTGACAACAAGCACTGGCCCGAGAGCCATTGGGTACAATTGATTGAGTTAG
TGCAACCCACAGGTTTAAAAATCAAACTACCGTGGGGCGCAGAACATGAGCATCAGCGCGCTTTACGATTAGCGGAACAT
TTCCCACACGTAGAGGTTCTGCCTAAGCTCAGTCTTCAGCAGGTCGCCGAGGTTCTGGCGGGTGCAAAAGCCGTAGTCTC
TGTCGATACTGGCCTCAGCCATCTGACCGCCGCCCTGGATCGCCCAAACATTACGCTGTTTGGCCCCACTGACCCCGGTT
TAATCGGCGGCTACGGGAAAAACCAAATTGCCGTGATTTCCGAGCAAAAAAAGATGGATAGCCTCTCTGCGCCCACTATT
ATGGCACGATTAGAAACACTCATTTCATAG

Upstream 100 bases:

>100_bases
TCCGCAAGGGCGATTCTGCACAGGGCTATCATCAAAGTTTGATTGATATCCAACCCGAACACGTGATGGCCGCGCTTGAG
AAGCAATTGGCTACGCAAGA

Downstream 100 bases:

>100_bases
CGCTGCTTTATTGTCTCTGAAAGAGTGAGTTCATAAACATCCGATATAAAACTTTCATCGATTCTGGTAATTATCAGGGT
CGATGAAATTGAGAAATATT

Product: ADP-heptose:LPS heptosyl transferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLSQRGRLMHVLIVKTSSMGDVLHTLPALTDAMNAIPGIRFDWVVEEGFSQIPSWHPAVDKVIPVAIRRWRKNWFGSDTR
QERCDFKRVVQQRSYDRVIDAQGLIKSAALITRIAKGTKHGPDCKSAREPFASWFYNCRHEIDTKQHAVERIRQLFAKSL
GYDKPESYGDYAIAQRFLNQLPADAGQYLVFLHATTRDNKHWPESHWVQLIELVQPTGLKIKLPWGAEHEHQRALRLAEH
FPHVEVLPKLSLQQVAEVLAGAKAVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGKNQIAVISEQKKMDSLSAPTI
MARLETLIS

Sequences:

>Translated_329_residues
MLSQRGRLMHVLIVKTSSMGDVLHTLPALTDAMNAIPGIRFDWVVEEGFSQIPSWHPAVDKVIPVAIRRWRKNWFGSDTR
QERCDFKRVVQQRSYDRVIDAQGLIKSAALITRIAKGTKHGPDCKSAREPFASWFYNCRHEIDTKQHAVERIRQLFAKSL
GYDKPESYGDYAIAQRFLNQLPADAGQYLVFLHATTRDNKHWPESHWVQLIELVQPTGLKIKLPWGAEHEHQRALRLAEH
FPHVEVLPKLSLQQVAEVLAGAKAVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGKNQIAVISEQKKMDSLSAPTI
MARLETLIS
>Mature_329_residues
MLSQRGRLMHVLIVKTSSMGDVLHTLPALTDAMNAIPGIRFDWVVEEGFSQIPSWHPAVDKVIPVAIRRWRKNWFGSDTR
QERCDFKRVVQQRSYDRVIDAQGLIKSAALITRIAKGTKHGPDCKSAREPFASWFYNCRHEIDTKQHAVERIRQLFAKSL
GYDKPESYGDYAIAQRFLNQLPADAGQYLVFLHATTRDNKHWPESHWVQLIELVQPTGLKIKLPWGAEHEHQRALRLAEH
FPHVEVLPKLSLQQVAEVLAGAKAVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGKNQIAVISEQKKMDSLSAPTI
MARLETLIS

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=319, Percent_Identity=68.3385579937304, Blast_Score=462, Evalue=1e-131,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 37058; Mature: 37058

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSQRGRLMHVLIVKTSSMGDVLHTLPALTDAMNAIPGIRFDWVVEEGFSQIPSWHPAVD
CCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCHHHH
KVIPVAIRRWRKNWFGSDTRQERCDFKRVVQQRSYDRVIDAQGLIKSAALITRIAKGTKH
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GPDCKSAREPFASWFYNCRHEIDTKQHAVERIRQLFAKSLGYDKPESYGDYAIAQRFLNQ
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LPADAGQYLVFLHATTRDNKHWPESHWVQLIELVQPTGLKIKLPWGAEHEHQRALRLAEH
CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHH
FPHVEVLPKLSLQQVAEVLAGAKAVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGK
CCCHHHHHCCCHHHHHHHHCCCHHEEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCCC
NQIAVISEQKKMDSLSAPTIMARLETLIS
CEEEEEECHHHHHHCCCHHHHHHHHHHHC
>Mature Secondary Structure
MLSQRGRLMHVLIVKTSSMGDVLHTLPALTDAMNAIPGIRFDWVVEEGFSQIPSWHPAVD
CCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCHHHH
KVIPVAIRRWRKNWFGSDTRQERCDFKRVVQQRSYDRVIDAQGLIKSAALITRIAKGTKH
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GPDCKSAREPFASWFYNCRHEIDTKQHAVERIRQLFAKSLGYDKPESYGDYAIAQRFLNQ
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LPADAGQYLVFLHATTRDNKHWPESHWVQLIELVQPTGLKIKLPWGAEHEHQRALRLAEH
CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHH
FPHVEVLPKLSLQQVAEVLAGAKAVVSVDTGLSHLTAALDRPNITLFGPTDPGLIGGYGK
CCCHHHHHCCCHHHHHHHHCCCHHEEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCCC
NQIAVISEQKKMDSLSAPTIMARLETLIS
CEEEEEECHHHHHHCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]