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The map label for this gene is ydcI [H]

Identifier: 22123974

GI number: 22123974

Start: 65442

End: 66737

Strand: Reverse

Name: ydcI [H]

Synonym: y0053

Alternate gene names: 22123974

Gene position: 66737-65442 (Counterclockwise)

Preceding gene: 22123979

Following gene: 22123971

Centisome position: 1.45

GC content: 49.23

Gene sequence:

>1296_bases
TTGCCCAAGCGACAAGTTTTATTTAAGCTGAAAAAATTAAATAAAATAACGCGGCGAAATATGCAAAAGAAGAATGATCG
TAACTCGATAAAAATTATGCAAATAAGAGCATTTTGCATGACGGCTGAACAGGGGGCAGCTTCCTTAGCGGCGCTCAATT
TATTTCGCACTCAGTCAGCGATTACTCGTTCTATTCGTGATCTTGAACACACTTTAGCCATCTCGTTATTTGAACGCCAC
GCCAAGGGCATGCTGTTAACCGATTTGGGCAACGTTATTCTCCCACGAGCTCGTTCTGCCATGGAGGAGTTGACTCGGAT
CCCGGCACTGTTGCGTCGGTTACAACAACGCGACGATGAGGGTATTGAAGACCTTGAACCCACATGGTTATTCAATGAAC
GGCGGCTACAGATTTTCCTCTCGCTCTATCGCCAGCAGCACGCGTTGCATGTCGCTCAGGCACTGGATATCACCCAGTCG
GCGGTAAGCGCCGCGTTGAAGGTTTTGGAGAAGGGGGCGGGTATGTATCTGTTCCATCGAACACCAAAAGGGATGTTGCC
GACCCCTGCCGGTCATGAAATTGCGCCCTGTATCAGCCGGGCATTGAATGCGCTCCACCATATTCCGGAAGAGATCACCG
CACATAGAGGGGATTTGACCGGCTCGGTACGTGTTGGCGCTCTGCCATTAAGCCGTGCACGCCTGCTACCACAGGCAATG
ATCAAGCTGATTTCTCGCCACCCTGGCATAAAAATAGTCACTAATGAGAGTGGATTTACCGCCCTGATAGCTGAACTGCG
CGCCGGTGATATAGATTTCATTATCGGTGCACTGCGCAATGAGAAAATGCTTTTAGATATCCATAGCGAAATATTATTTG
AAGAAGAGCTGATTTTATTGGCGCGACCCAACCATCCCCTGTCTGATCGCAGGGTAAAAAACCAAGAACTAAAAGATATT
CAATGGGTTTTACCCCGAAATCACGCCCCATCACGCCACCTGCTGGAAGTCGCATTCTGCAAAATGGGACTCGCATCGCC
CCAGCCAGTAGTCGAAAGCGGTGATCCCGCCGTGGTACGTGCGCTATTGCTTGGTTCTGATATGGTGGCGGCAGTTTCCT
CCCATCAACTTGATTTTGAAGTTTCAGAAGGGATCCTCATACCGCTGCAGGTCAACCTTACAGGTACGCGACGCGAGATA
GGCCTGATGACTCGCCAGAAAGCCTTGAATTCACCCGCTACCGATGCCCTGATCAATTGTGTTCGCGAAGTTATTCAATC
GAGTAACGATAAATAG

Upstream 100 bases:

>100_bases
GGTTTTTTGTGGAATCATTGCCATATCTTTTTCCTTTTTTTGCTGCTTTAACTGTCTAGGATTCTGGCATGGCTTAATTA
ATGGGAAATAGTGAGTTTTA

Downstream 100 bases:

>100_bases
GCAGTTTTAGATAAATGAGTTAACCATCTAATTTATTTTTTGATTGATAAGAATACTTTTGTCAGAAAAACAAAAAACTC
CATTTTAGACTGGCACAGAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MPKRQVLFKLKKLNKITRRNMQKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERH
AKGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQS
AVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAM
IKLISRHPGIKIVTNESGFTALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDI
QWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVVRALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREI
GLMTRQKALNSPATDALINCVREVIQSSNDK

Sequences:

>Translated_431_residues
MPKRQVLFKLKKLNKITRRNMQKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERH
AKGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQS
AVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAM
IKLISRHPGIKIVTNESGFTALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDI
QWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVVRALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREI
GLMTRQKALNSPATDALINCVREVIQSSNDK
>Mature_430_residues
PKRQVLFKLKKLNKITRRNMQKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERHA
KGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQSA
VSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAMI
KLISRHPGIKIVTNESGFTALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDIQ
WVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVVRALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREIG
LMTRQKALNSPATDALINCVREVIQSSNDK

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=309, Percent_Identity=27.5080906148867, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787601, Length=197, Percent_Identity=28.9340101522843, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=25.1700680272109, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1789506, Length=261, Percent_Identity=24.5210727969349, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788481, Length=206, Percent_Identity=27.6699029126214, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 48188; Mature: 48057

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKRQVLFKLKKLNKITRRNMQKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDDE
HHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHR
CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
TPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAM
CCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHH
IKLISRHPGIKIVTNESGFTALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILL
HHHHHCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEEHHHHHHHHCCEEEE
ARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVVR
ECCCCCCCCCHHCHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
ALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINC
HHHHCCHHHHHHHCCCCCEEECCCEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHH
VREVIQSSNDK
HHHHHHCCCCC
>Mature Secondary Structure 
PKRQVLFKLKKLNKITRRNMQKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSA
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDDE
HHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHR
CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
TPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAM
CCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHH
IKLISRHPGIKIVTNESGFTALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILL
HHHHHCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEEHHHHHHHHCCEEEE
ARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVVR
ECCCCCCCCCHHCHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
ALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINC
HHHHCCHHHHHHHCCCCCEEECCCEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHH
VREVIQSSNDK
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]