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The map label for this gene is rpiR [C]

Identifier: 221232007

GI number: 221232007

Start: 1193090

End: 1193701

Strand: Reverse

Name: rpiR [C]

Synonym: SPN23F_12240

Alternate gene names: 221232007

Gene position: 1193701-1193090 (Counterclockwise)

Preceding gene: 221232009

Following gene: 221232005

Centisome position: 53.74

GC content: 28.1

Gene sequence:

>612_bases
ATGACGAAAGATATATTAGAGTTAGAATCTCAAAAAATGAGTAGTGACACATTTATTGATGAAATAAAAAATAATTATTT
ATCTATTGTGGAAAGTACAAGAAAATTAATTGATGGTAGACAAATAGAATTAGCTATAAAATTAATAAGAGAAGCAAACC
AGATTTTAATGATTGGTGTGGGTTCTAGTGGAAATGCGGCTAGAGAATTTGAGAGTAGTTTGTTAAGAATTGGAATAATA
AGTAAGACGGTAATTGATACCCATTTTCAACTCATGCATACTGCGTTATTGAAAGATAATGATTTGATAATAGCGTTTAG
TTTATCTGGTTCCACAAAAGAAGTTGAGGAAACTTTATTAAACGCAAAAAGAAAAAATGTTAAAATTATTTCAATAACAA
ATTATTCGTCCAGAAATATAGCAAAATTATCTGACTGCGTTCTTTTGACATCAAAAAAAGAATCTTATTTAGAGGGTGGT
AGTTTAATGGCTAAGGCTTCTCAACTATTCATAATTGATGTAATATGCACTAGACTCTCTTTAATAAATTATGAAGATAC
TATATGTAAAAAAGAAGAGATTGCTTCTTTGCTGTCAAATAAAGTGGAATAA

Upstream 100 bases:

>100_bases
GTCTTCAGAAATTGTTAGTAAAGTAAAAGTTGGAGAGGGAACTCTTAATCGATTTTGCAAAAAGATTGGATACTCTGGTT
TTCAGGAACTAAAATTAAAA

Downstream 100 bases:

>100_bases
ATCAATAATTTTTAAATTTTAATAAAAATTTTTTAAAATAAATTAAAAAACGATCCTAAAAGGGTCGTTTTTTTGCTGGC
TCTTTGTCAACTGTAGTGGG

Product: phosphosugar-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MTKDILELESQKMSSDTFIDEIKNNYLSIVESTRKLIDGRQIELAIKLIREANQILMIGVGSSGNAAREFESSLLRIGII
SKTVIDTHFQLMHTALLKDNDLIIAFSLSGSTKEVEETLLNAKRKNVKIISITNYSSRNIAKLSDCVLLTSKKESYLEGG
SLMAKASQLFIIDVICTRLSLINYEDTICKKEEIASLLSNKVE

Sequences:

>Translated_203_residues
MTKDILELESQKMSSDTFIDEIKNNYLSIVESTRKLIDGRQIELAIKLIREANQILMIGVGSSGNAAREFESSLLRIGII
SKTVIDTHFQLMHTALLKDNDLIIAFSLSGSTKEVEETLLNAKRKNVKIISITNYSSRNIAKLSDCVLLTSKKESYLEGG
SLMAKASQLFIIDVICTRLSLINYEDTICKKEEIASLLSNKVE
>Mature_202_residues
TKDILELESQKMSSDTFIDEIKNNYLSIVESTRKLIDGRQIELAIKLIREANQILMIGVGSSGNAAREFESSLLRIGIIS
KTVIDTHFQLMHTALLKDNDLIIAFSLSGSTKEVEETLLNAKRKNVKIISITNYSSRNIAKLSDCVLLTSKKESYLEGGS
LMAKASQLFIIDVICTRLSLINYEDTICKKEEIASLLSNKVE

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=193, Percent_Identity=25.9067357512953, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1788767, Length=154, Percent_Identity=27.9220779220779, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 22664; Mature: 22532

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKDILELESQKMSSDTFIDEIKNNYLSIVESTRKLIDGRQIELAIKLIREANQILMIGV
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEE
GSSGNAAREFESSLLRIGIISKTVIDTHFQLMHTALLKDNDLIIAFSLSGSTKEVEETLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
NAKRKNVKIISITNYSSRNIAKLSDCVLLTSKKESYLEGGSLMAKASQLFIIDVICTRLS
HHHHCCEEEEEEECCCCCCHHHHHHEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
LINYEDTICKKEEIASLLSNKVE
HCCCHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TKDILELESQKMSSDTFIDEIKNNYLSIVESTRKLIDGRQIELAIKLIREANQILMIGV
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEE
GSSGNAAREFESSLLRIGIISKTVIDTHFQLMHTALLKDNDLIIAFSLSGSTKEVEETLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
NAKRKNVKIISITNYSSRNIAKLSDCVLLTSKKESYLEGGSLMAKASQLFIIDVICTRLS
HHHHCCEEEEEEECCCCCCHHHHHHEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
LINYEDTICKKEEIASLLSNKVE
HCCCHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]