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The map label for this gene is yqxC [H]

Identifier: 221231905

GI number: 221231905

Start: 1078882

End: 1079697

Strand: Reverse

Name: yqxC [H]

Synonym: SPN23F_11040

Alternate gene names: 221231905

Gene position: 1079697-1078882 (Counterclockwise)

Preceding gene: 221231906

Following gene: 221231904

Centisome position: 48.61

GC content: 44.36

Gene sequence:

>816_bases
ATGGCTAAGGAAAGAGTGGATGTACTAGCTTATAAACAGGGGTTGTTTGAAACGAGAGAGCAGGCCAAGCGAGGTGTAAT
GGCTGGCCTAGTCGTAGCAGTCCTTAATGGAGAACGGTTTGACAAGCCAGGAGAGAAAATTCCAGATGACACCGAATTAA
AACTCAAGGGAGAGAAACTCAAGTATGTCAGCCGTGGTGGTTTGAAACTGGAAAAGGCCTTGCAGGTCTTTGATTTGTCG
GTGGATGGCGCGACTACGATTGATATCGGGGCCTCTACTGGAGGTTTTACCGATGTCATGCTACAGAATAGTGCCAAGTT
GGTCTTTGCAGTCGATGTTGGTACCAATCAGTTGGCTTGGAAATTACGCCAAGACCCACGAGTTGTTAGCATGGAGCAGT
TCAATTTCCGCTATGCTGAAAAGACTGATTTCGAGCAGGAGCCGAGCTTTGCCAGTATTGATGTGAGTTTCATTTCCCTT
AGTCTGATTTTGCCAGCCTTGCATCGTGTCTTGGCTGATCAAGGTCAGGTGGTAGCACTTGTCAAACCTCAGTTTGAGGC
AGGACGTGAGCAGATTGGGAAAAATGGAATTATTCGAGATGCTAAGATTCATCAGAATGTCCTTGAATCTGTAACAGCTA
TGGCAGTAGAGGCAGGTTTTTCAGTCCTTGGCTTGGACTTTTCTCCCATCCAAGGTGGACATGGAAATATTGAATTTTTA
GCGTATTTGAAAAAAGAAAAGTCAGCAAGCAATCAGATTTTTGCTGAGATTAAAGAAGCAGTAGAGAGGGCGCATAGTCA
ATTTAAAAATGAATAA

Upstream 100 bases:

>100_bases
CAAACCCTGGATCAAGCTAATGAAAAATTAGAAGAAATTGCCCAGCAGCTTCCCTTTGAAACAGAATCGATTGTAAGTGT
AGTAGAAAGTTTGAGAATCA

Downstream 100 bases:

>100_bases
AAAAGAGAGACTTGAAAAAATTAGAAGATTGGTGACAGATTATCAAATCGGCACGCAAGAAGAAATTGTAGAACATTTGA
AAGAAGCAGGTATCACTGCC

Product: hemolysin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MAKERVDVLAYKQGLFETREQAKRGVMAGLVVAVLNGERFDKPGEKIPDDTELKLKGEKLKYVSRGGLKLEKALQVFDLS
VDGATTIDIGASTGGFTDVMLQNSAKLVFAVDVGTNQLAWKLRQDPRVVSMEQFNFRYAEKTDFEQEPSFASIDVSFISL
SLILPALHRVLADQGQVVALVKPQFEAGREQIGKNGIIRDAKIHQNVLESVTAMAVEAGFSVLGLDFSPIQGGHGNIEFL
AYLKKEKSASNQIFAEIKEAVERAHSQFKNE

Sequences:

>Translated_271_residues
MAKERVDVLAYKQGLFETREQAKRGVMAGLVVAVLNGERFDKPGEKIPDDTELKLKGEKLKYVSRGGLKLEKALQVFDLS
VDGATTIDIGASTGGFTDVMLQNSAKLVFAVDVGTNQLAWKLRQDPRVVSMEQFNFRYAEKTDFEQEPSFASIDVSFISL
SLILPALHRVLADQGQVVALVKPQFEAGREQIGKNGIIRDAKIHQNVLESVTAMAVEAGFSVLGLDFSPIQGGHGNIEFL
AYLKKEKSASNQIFAEIKEAVERAHSQFKNE
>Mature_270_residues
AKERVDVLAYKQGLFETREQAKRGVMAGLVVAVLNGERFDKPGEKIPDDTELKLKGEKLKYVSRGGLKLEKALQVFDLSV
DGATTIDIGASTGGFTDVMLQNSAKLVFAVDVGTNQLAWKLRQDPRVVSMEQFNFRYAEKTDFEQEPSFASIDVSFISLS
LILPALHRVLADQGQVVALVKPQFEAGREQIGKNGIIRDAKIHQNVLESVTAMAVEAGFSVLGLDFSPIQGGHGNIEFLA
YLKKEKSASNQIFAEIKEAVERAHSQFKNE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29846; Mature: 29714

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKERVDVLAYKQGLFETREQAKRGVMAGLVVAVLNGERFDKPGEKIPDDTELKLKGEKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCE
KYVSRGGLKLEKALQVFDLSVDGATTIDIGASTGGFTDVMLQNSAKLVFAVDVGTNQLAW
EEHHCCCCCHHHHHHHHEEECCCCEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCEEE
KLRQDPRVVSMEQFNFRYAEKTDFEQEPSFASIDVSFISLSLILPALHRVLADQGQVVAL
EECCCCCEEEHHHCCEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEE
VKPQFEAGREQIGKNGIIRDAKIHQNVLESVTAMAVEAGFSVLGLDFSPIQGGHGNIEFL
ECCCHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHE
AYLKKEKSASNQIFAEIKEAVERAHSQFKNE
EEEHHHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKERVDVLAYKQGLFETREQAKRGVMAGLVVAVLNGERFDKPGEKIPDDTELKLKGEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCE
KYVSRGGLKLEKALQVFDLSVDGATTIDIGASTGGFTDVMLQNSAKLVFAVDVGTNQLAW
EEHHCCCCCHHHHHHHHEEECCCCEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCEEE
KLRQDPRVVSMEQFNFRYAEKTDFEQEPSFASIDVSFISLSLILPALHRVLADQGQVVAL
EECCCCCEEEHHHCCEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEE
VKPQFEAGREQIGKNGIIRDAKIHQNVLESVTAMAVEAGFSVLGLDFSPIQGGHGNIEFL
ECCCHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHE
AYLKKEKSASNQIFAEIKEAVERAHSQFKNE
EEEHHHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]