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The map label for this gene is cspB [H]

Identifier: 221230630

GI number: 221230630

Start: 2551936

End: 2552346

Strand: Reverse

Name: cspB [H]

Synonym: MLBr_02147

Alternate gene names: 221230630

Gene position: 2552346-2551936 (Counterclockwise)

Preceding gene: 221230632

Following gene: 221230627

Centisome position: 78.1

GC content: 62.53

Gene sequence:

>411_bases
GTGCCGACCGGCAAGGTGAAGTGGTATGACGCCGACAAGGGGTTTGGCTTCCTTTCACAGGAGGATGGCGAAGACGTCTA
TGTTCGCTCGTCGGCGTTGCCCGCGGGTGTCGAGGGGCTCAAAGCCGGGCAACGGGTAGAGTTTGGCGTGGCTTCTGGCC
GGCGTGGGCCGCAAGCATTGAGCCTCAAGTTGATTGATCCGCCACCGAGCTTTGCTCGCCAAGTGCGCCGCGAGGCGCTG
GCCGAGCACAGGCACAGCCCGGATGAACTGCACGGCATGGTCGAAGATATGATCACTTTGCTGGAGAGCACGGTGCAGCC
CGAATTGCGTAAAGGCCGCTACCCGGATCGCAAAACGGCCAGGAGGGTATCTGAGGTGGTCAAGGCGGTGGCCCGCGAGT
TCGACGCGTAG

Upstream 100 bases:

>100_bases
CCGAGTAAGATTGGAAACTAACATTGTGTCCCGCCTACGTAGGCGGGACGTTTGTTCTGTTGTCCATCTTAGTGATCTGT
TAGACAAGCAGGTGAGACCA

Downstream 100 bases:

>100_bases
TGGGGGTCTTAGTGGGTTGATTAGCTTGAAGGCAGCGCTGCGCAGCGTCGTCTTTCTCATTGTGGCTGGCTTCCTCTCCT
AGGGTGCCTTGACTTCTTGT

Product: putative cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVASGRRGPQALSLKLIDPPPSFARQVRREAL
AEHRHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTARRVSEVVKAVAREFDA

Sequences:

>Translated_136_residues
MPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVASGRRGPQALSLKLIDPPPSFARQVRREAL
AEHRHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTARRVSEVVKAVAREFDA
>Mature_135_residues
PTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVASGRRGPQALSLKLIDPPPSFARQVRREALA
EHRHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTARRVSEVVKAVAREFDA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=47.5409836065574, Blast_Score=60, Evalue=6e-11,
Organism=Escherichia coli, GI1789979, Length=59, Percent_Identity=50.8474576271186, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 15103; Mature: 14972

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVASGRRGPQAL
CCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCEEEECCCCCCCCCCEE
SLKLIDPPPSFARQVRREALAEHRHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA
EEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHH
RRVSEVVKAVAREFDA
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGVASGRRGPQAL
CCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCEEEECCCCCCCCCCEE
SLKLIDPPPSFARQVRREALAEHRHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTA
EEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHH
RRVSEVVKAVAREFDA
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]