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The map label for this gene is yijC [C]

Identifier: 221230408

GI number: 221230408

Start: 2093377

End: 2094204

Strand: Reverse

Name: yijC [C]

Synonym: MLBr_01733

Alternate gene names: 221230408

Gene position: 2094204-2093377 (Counterclockwise)

Preceding gene: 221230409

Following gene: 221230407

Centisome position: 64.08

GC content: 59.9

Gene sequence:

>828_bases
GTGACCCGTCGCAGTATCCATACCCGCAAGCCGTTGAAGTGGTCGGGCTGTGCGGGTCAGCATGTGCGATCCGGTAAGGT
ATTTGACGTGGGGAGAATTAGCCTATCCTATCCCAGCATGAAACCCGGGGTGAAGATCGACGCACGCAGTGAACGTTGGC
GTGAACACCGTAAGAAGGTGCGCGGCGAAATCGTCGATGCGGCTTTCCGCGCTCTCGACCGGCTGGGGCCTGAGGTCAGT
GTGCGGGAAATCGCCGAAGAGGCCGGAACCGCTAAGCCCAAGATCTACCGGCACTTCACCGACAAGTCCGATCTGTTCGA
AGCTATCGGCATACGTCTGCGTGACATGCTGTGGGCGGCGATCTTTCCGGCTATCGACTTAGCTACCGACTCGGCTCGCG
AAATCATCCGGCGCAGCGTCGACGAATATGTCAGCCTCGTCGACAAACATCCCAATGTGTTGCGGGTTTTCATCCAAGGC
CGTTTCTCGGCGCAGTCCGAGGCAACAGTTCGGACCCTCGACGAAGGCCGCGAAATCACCCTGACCATGGCCGAGATGTT
CAACAACGAGCTGCGGGAAATGGAGCTAAACCGCGCGGCTAGCGAACTTGCCGCGTTCGCCGCCTTCGGATCGGTTGCGT
CGGCCACAGAGTGGTGGTTGGGTCCCGAACCCGATAGCCCGCGGCGGATGCCACGTGAGCAGTTCGTCGCGCATCTGACG
ATCATCATGATGGCCGTCATCGTCGGAACCGCAGAGACGCTTGGCATCTCGATGAATCCTGATCGGCCGATCCACGATGC
GGTACCACTCGATCGCTCCGCGAGCTGA

Upstream 100 bases:

>100_bases
CAGATGGCGCTGGAAGGCACCGAAGTCGAGGGCTGCGTGTCTTGCACGCTGTAAGTTCCTCGGTTCCTCGCGAGTATGGA
TACTGCGACGCGATACGTCC

Downstream 100 bases:

>100_bases
GCATTGACGGTGTTGACATCGTTACGATGATCGAAAAATCATATTGAAATTTGTGTACGATACCCCGGGTACCGGATATT
TGTGACAGCTAGATGCCTAG

Product: putative TetR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTRRSIHTRKPLKWSGCAGQHVRSGKVFDVGRISLSYPSMKPGVKIDARSERWREHRKKVRGEIVDAAFRALDRLGPEVS
VREIAEEAGTAKPKIYRHFTDKSDLFEAIGIRLRDMLWAAIFPAIDLATDSAREIIRRSVDEYVSLVDKHPNVLRVFIQG
RFSAQSEATVRTLDEGREITLTMAEMFNNELREMELNRAASELAAFAAFGSVASATEWWLGPEPDSPRRMPREQFVAHLT
IIMMAVIVGTAETLGISMNPDRPIHDAVPLDRSAS

Sequences:

>Translated_275_residues
MTRRSIHTRKPLKWSGCAGQHVRSGKVFDVGRISLSYPSMKPGVKIDARSERWREHRKKVRGEIVDAAFRALDRLGPEVS
VREIAEEAGTAKPKIYRHFTDKSDLFEAIGIRLRDMLWAAIFPAIDLATDSAREIIRRSVDEYVSLVDKHPNVLRVFIQG
RFSAQSEATVRTLDEGREITLTMAEMFNNELREMELNRAASELAAFAAFGSVASATEWWLGPEPDSPRRMPREQFVAHLT
IIMMAVIVGTAETLGISMNPDRPIHDAVPLDRSAS
>Mature_274_residues
TRRSIHTRKPLKWSGCAGQHVRSGKVFDVGRISLSYPSMKPGVKIDARSERWREHRKKVRGEIVDAAFRALDRLGPEVSV
REIAEEAGTAKPKIYRHFTDKSDLFEAIGIRLRDMLWAAIFPAIDLATDSAREIIRRSVDEYVSLVDKHPNVLRVFIQGR
FSAQSEATVRTLDEGREITLTMAEMFNNELREMELNRAASELAAFAAFGSVASATEWWLGPEPDSPRRMPREQFVAHLTI
IMMAVIVGTAETLGISMNPDRPIHDAVPLDRSAS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 30968; Mature: 30837

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRSIHTRKPLKWSGCAGQHVRSGKVFDVGRISLSYPSMKPGVKIDARSERWREHRKKV
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECEEEEECCCCCCCEEECCHHHHHHHHHHHH
RGEIVDAAFRALDRLGPEVSVREIAEEAGTAKPKIYRHFTDKSDLFEAIGIRLRDMLWAA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHH
IFPAIDLATDSAREIIRRSVDEYVSLVDKHPNVLRVFIQGRFSAQSEATVRTLDEGREIT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHEEHEECCCCCCCCHHHHHHHCCCCEEE
LTMAEMFNNELREMELNRAASELAAFAAFGSVASATEWWLGPEPDSPRRMPREQFVAHLT
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
IIMMAVIVGTAETLGISMNPDRPIHDAVPLDRSAS
HHHHHHHHCCHHHCEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRRSIHTRKPLKWSGCAGQHVRSGKVFDVGRISLSYPSMKPGVKIDARSERWREHRKKV
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECEEEEECCCCCCCEEECCHHHHHHHHHHHH
RGEIVDAAFRALDRLGPEVSVREIAEEAGTAKPKIYRHFTDKSDLFEAIGIRLRDMLWAA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHH
IFPAIDLATDSAREIIRRSVDEYVSLVDKHPNVLRVFIQGRFSAQSEATVRTLDEGREIT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHEEHEECCCCCCCCHHHHHHHCCCCEEE
LTMAEMFNNELREMELNRAASELAAFAAFGSVASATEWWLGPEPDSPRRMPREQFVAHLT
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
IIMMAVIVGTAETLGISMNPDRPIHDAVPLDRSAS
HHHHHHHHCCHHHCEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]