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The map label for this gene is yfdZ [H]

Identifier: 221230260

GI number: 221230260

Start: 1792887

End: 1793990

Strand: Reverse

Name: yfdZ [H]

Synonym: MLBr_01488

Alternate gene names: 221230260

Gene position: 1793990-1792887 (Counterclockwise)

Preceding gene: 221230261

Following gene: 221230258

Centisome position: 54.89

GC content: 64.04

Gene sequence:

>1104_bases
GTGTCCCCCTTTGGGCGAGTGTCGGCTACCTTGCCGGTGTTTCCCTGGGATACCTTGGCCGATGCGAAAGCCGTCGCCGA
GAGTCATCCCGACGGTATTGTCGACCTGTCCGTTGGCACCCCGGTCGATCCCGTAGCGCCGCTGATTCAAGAAGCTCTTG
CTGCCGCGAGCTCCGTAGCGGGATATCCCACTACGGCCGGCACTGCGCGGCTGCGTGAGGCGGCCGTGGCAGCGTTGGAC
CGCCGCTACGGCATCACCGGACTCACTGAGGCGGCCGTGCTACCTGTGATTGGCACCAAGGAACTGATCGCCTGGTTGCC
GACCCTGCTGGGCCTGCGCGCCGGCGACGTGGTTGTGGTGCCGGAACTGGCGTATCCGACATATAATGTTGGCGCCCGGT
TGGCCGGAGCACGGGTGCTGCGTGCGGATTCGTTGACCCAGCTGGGCCTGCAGTCCCCGGCGCTGTTCTACCTCAACTCT
CCGAGCAACCCGACCGGCCAAGTACTCGCCGTGAACCACTTGCGCAAGATGGTGGGATGGGCGCGCAATCGTGGTGTCGT
GGTGGTTTCTGACGAGTGCTACCTGGGTTTAGGTTGGGACGCCGAGCCGTTCTCGGTGTTGCACCCTTTGGTTTGTGACG
GCAACCATACTGGGCTGCTGGCGGTGCACTCGCTGTCAAAGAGCTCGTCGTTGGCCGGATATCGGGCGGGTTTTGTTGCT
GGAGATCCGGACTTGGTTGCTGAGCTGCTGGCGGTACGCAAACACGCCGGGATGATGGTGCCGACTCCGGTGCAGGCGGC
CATGGTCGCCGCCCTTGGGGACGACGCTCACGAACGCGAGCAGCGAGACCGCTACGCTCGTCGAAGGGATGTTTTGTTGC
CCGCGGTCGTATCAGCCGGTTTTACCGTTGATCATTCCGAGGCCGGCTTGTACCTGTGGGCCAGCCGTGGTGAGCCTTGT
CGGGATAGCGTTGAGTGGTTCGCCCAGCGTGGAATCCTGGTGGCGCTCGGCGAATTCTACGGCCCCGGTGGTTGTCAGCA
TGTGAGGGTGGCTCTGACCGCCAGCGATGAGCGGATCGCTGCCGTCGTCGCGCGGCTCAGCTAG

Upstream 100 bases:

>100_bases
GGTATGGCTGAGAATGATCCGCAAGTGATCAAGAACCTCGCGCCGCAGGGCGAAGGCGATTGAGTCGGACGGCGTTGGAG
AAGCTAGCAGGGAGGGGTGC

Downstream 100 bases:

>100_bases
ATCACCGGAGCAACGCCGTGATGTTTGCCTCGTCGATCTGTCTTTAGTGCTGTTGACGTTTCGGTTTGAATTTGAAAGAG
CCTGGGAGCAAACGGTAAAG

Product: N-succinyldiaminopimelate aminotransferase

Products: oxaloacetate; L-glutamate

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MSPFGRVSATLPVFPWDTLADAKAVAESHPDGIVDLSVGTPVDPVAPLIQEALAAASSVAGYPTTAGTARLREAAVAALD
RRYGITGLTEAAVLPVIGTKELIAWLPTLLGLRAGDVVVVPELAYPTYNVGARLAGARVLRADSLTQLGLQSPALFYLNS
PSNPTGQVLAVNHLRKMVGWARNRGVVVVSDECYLGLGWDAEPFSVLHPLVCDGNHTGLLAVHSLSKSSSLAGYRAGFVA
GDPDLVAELLAVRKHAGMMVPTPVQAAMVAALGDDAHEREQRDRYARRRDVLLPAVVSAGFTVDHSEAGLYLWASRGEPC
RDSVEWFAQRGILVALGEFYGPGGCQHVRVALTASDERIAAVVARLS

Sequences:

>Translated_367_residues
MSPFGRVSATLPVFPWDTLADAKAVAESHPDGIVDLSVGTPVDPVAPLIQEALAAASSVAGYPTTAGTARLREAAVAALD
RRYGITGLTEAAVLPVIGTKELIAWLPTLLGLRAGDVVVVPELAYPTYNVGARLAGARVLRADSLTQLGLQSPALFYLNS
PSNPTGQVLAVNHLRKMVGWARNRGVVVVSDECYLGLGWDAEPFSVLHPLVCDGNHTGLLAVHSLSKSSSLAGYRAGFVA
GDPDLVAELLAVRKHAGMMVPTPVQAAMVAALGDDAHEREQRDRYARRRDVLLPAVVSAGFTVDHSEAGLYLWASRGEPC
RDSVEWFAQRGILVALGEFYGPGGCQHVRVALTASDERIAAVVARLS
>Mature_366_residues
SPFGRVSATLPVFPWDTLADAKAVAESHPDGIVDLSVGTPVDPVAPLIQEALAAASSVAGYPTTAGTARLREAAVAALDR
RYGITGLTEAAVLPVIGTKELIAWLPTLLGLRAGDVVVVPELAYPTYNVGARLAGARVLRADSLTQLGLQSPALFYLNSP
SNPTGQVLAVNHLRKMVGWARNRGVVVVSDECYLGLGWDAEPFSVLHPLVCDGNHTGLLAVHSLSKSSSLAGYRAGFVAG
DPDLVAELLAVRKHAGMMVPTPVQAAMVAALGDDAHEREQRDRYARRRDVLLPAVVSAGFTVDHSEAGLYLWASRGEPCR
DSVEWFAQRGILVALGEFYGPGGCQHVRVALTASDERIAAVVARLS

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Escherichia coli, GI1788722, Length=386, Percent_Identity=32.1243523316062, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1786816, Length=327, Percent_Identity=24.7706422018349, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.1

Molecular weight: Translated: 38737; Mature: 38605

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPFGRVSATLPVFPWDTLADAKAVAESHPDGIVDLSVGTPVDPVAPLIQEALAAASSVA
CCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
GYPTTAGTARLREAAVAALDRRYGITGLTEAAVLPVIGTKELIAWLPTLLGLRAGDVVVV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHEECCCCHHHHHHHHHHHHCCCCCCEEEE
PELAYPTYNVGARLAGARVLRADSLTQLGLQSPALFYLNSPSNPTGQVLAVNHLRKMVGW
CCCCCCCCCCCHHHHHHHEEHHCCHHHHCCCCCEEEEEECCCCCCCCEEEHHHHHHHHHH
ARNRGVVVVSDECYLGLGWDAEPFSVLHPLVCDGNHTGLLAVHSLSKSSSLAGYRAGFVA
HCCCCEEEEECCEEEECCCCCCHHHHHCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCC
GDPDLVAELLAVRKHAGMMVPTPVQAAMVAALGDDAHEREQRDRYARRRDVLLPAVVSAG
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCC
FTVDHSEAGLYLWASRGEPCRDSVEWFAQRGILVALGEFYGPGGCQHVRVALTASDERIA
CEEECCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEHHHCCCCCCCEEEEEEEECCHHHH
AVVARLS
HHHHHCC
>Mature Secondary Structure 
SPFGRVSATLPVFPWDTLADAKAVAESHPDGIVDLSVGTPVDPVAPLIQEALAAASSVA
CCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
GYPTTAGTARLREAAVAALDRRYGITGLTEAAVLPVIGTKELIAWLPTLLGLRAGDVVVV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHEECCCCHHHHHHHHHHHHCCCCCCEEEE
PELAYPTYNVGARLAGARVLRADSLTQLGLQSPALFYLNSPSNPTGQVLAVNHLRKMVGW
CCCCCCCCCCCHHHHHHHEEHHCCHHHHCCCCCEEEEEECCCCCCCCEEEHHHHHHHHHH
ARNRGVVVVSDECYLGLGWDAEPFSVLHPLVCDGNHTGLLAVHSLSKSSSLAGYRAGFVA
HCCCCEEEEECCEEEECCCCCCHHHHHCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCC
GDPDLVAELLAVRKHAGMMVPTPVQAAMVAALGDDAHEREQRDRYARRRDVLLPAVVSAG
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCC
FTVDHSEAGLYLWASRGEPCRDSVEWFAQRGILVALGEFYGPGGCQHVRVALTASDERIA
CEEECCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEHHHCCCCCCCEEEEEEEECCHHHH
AVVARLS
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-aspartate; 2-oxoglutarate

Specific reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]