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The map label for this gene is yciR [C]

Identifier: 221230223

GI number: 221230223

Start: 1704287

End: 1705978

Strand: Reverse

Name: yciR [C]

Synonym: MLBr_01419

Alternate gene names: 221230223

Gene position: 1705978-1704287 (Counterclockwise)

Preceding gene: 221230225

Following gene: 221230222

Centisome position: 52.2

GC content: 60.7

Gene sequence:

>1692_bases
GTGTTGGAGACGGTGCGTAGCGTCATGGTCCACAGTGGCGAGTGCTCAGCTGAGTCGACTGCCGACAAAGAACACCGCCA
TCATGATCTTGTCGCCCAACGGTACCAACGGCTTGTCGACCACAGCCCCAACATGACCTGCGTGCATGAAAGCGGCCGAG
TGACCTATCTCAATCCCGTTGGTGTCAAGTGGATGGCCGCACAGTCGCCCGAGCAGATCATCGGGCACCCGCTGATCGAG
TTTGTCCACCCCGACTCTATGCCGGCAATGATGTCCCGCATCGCGCCCCTGCGCGAGGTTGGCGACGCATCTCAGCCATC
GGAGGCGGTGCTGCTACGCCTCGACGGCACTACGCTTGAGGTCGAAGCGGTATCGGTGCTCACCGTATGGGAAGGAAAAC
CCGCTTACCAGGTCATCTTTCGCGACCTGACCACTCAGAAAGCCGCGGAAGAAACGCTGCGCTTCCAAGCGGCTTTGGTC
AACCACGTCAGTGACGCCATCATCGCCACCACGTCGACCGGCATGGTCACCAGCTGGAACCCGGCCGCGGAGGCCATCTA
CCGTCGTTCCGCATCAGACGTCCTAGGCATGCCGATCGGTGAAGCTGTAGGCGCGCCGCTGGATCCGGGCGCCATAATCA
CCGAGGGTGGGGTGCTAAGTACTACCCAGTACGCCTCGGATGGCATGGCTCTGGCCGTGCGGGTGTCTGCGGCCGTGATG
GAAAACGGTTTCGTGCTGGTGTGCAGCGATTACACCGCGCTGCTCCGAGTCGAGCGCCGCTTCCAAACTGTCGTCGCATT
ATTGGAGGAAGGAGTCATCGTCCTGGACGGCGACGGCTACGTCGAATCAGTGAACCCTGCCGCCCTGCGCATTCTTGGCG
TCAGTGACCGAAGTGCCCTCGATGACCCCGTCCGGCGGGCAGCAACGCTTCCGATGTACGATGCCCAAGGCCGGCTGCTT
GACCACGGTCGGGGGGCTGTGCGCGAGTTTTTGCGGACCGGTACCCCAAAAACTGGCTTCATCGTCGGTATCGATCGTCC
TAGCGACGGGACACGGGTTTGGTTGTCAGTCAACAGCCGATCGCTCAATCCCGTCGATCCCGAAGACGCGACGTTGCTGA
TTTCCTTCACCGACGTCACGGCCGAGCGCCAGGCTAGCCAATACCTGGCCCATCAAGCGGCGCACGACACGCTGACCGGC
TTGCCTAACCGCACGTCCATCCTCGCCCGTATCGATGAACAACGTTACTGCGGCGCCCCCGACCAGCTGCTGACAGCGGT
GCTGTTCATCGACCTGGACAATTTCAAGGGCATCAACGATTCGCTGGGGCACGACGTTGGCGACGTAGTGCTGCAGACTG
CAGCGCAACGATTGCGGGCGGGATTGCGATCACGCGATGTGGTGGGTAGGTTCGGAGGTGACGAGTTCGTCGCTCTGATC
CTGGGAAAGATCACCCATACTGAATTGAGCAAAGTCGTAGACAGGATGCACGCGGCACTATCTGAGCCGACCTACGTCGC
CGATGCTGTACTCCACCTTCGTGCGAGTATCGGTGTCGTTGCGATCAAAGGCGACGACCCCCGCAACATAGGTCAGATCC
TGCGCGACGCCGACACCGCAATGTATCGGGCAAAACTTTCCGGCGAAGGGACCAGCTACTACACTGACACGTTCAACCAA
CAACCTAGCTGA

Upstream 100 bases:

>100_bases
ACAAAACTGTCTACAAGGGCTGGTTATTGCTCTGCTGTGATGCCCTACCTTAGCTTAGTCAAAGGAAACAATACCTTAAA
ATTATTTTTAGAGTAATCAA

Downstream 100 bases:

>100_bases
ACGAAGTCGGTAGAGATTATTTAACAACGCCTGATAGCACAATTTGCCATCGTGACCTATTGGCGATACGCAGCCCTCGC
CAGCCAGAAAGAGGGGAGTG

Product: putative regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MLETVRSVMVHSGECSAESTADKEHRHHDLVAQRYQRLVDHSPNMTCVHESGRVTYLNPVGVKWMAAQSPEQIIGHPLIE
FVHPDSMPAMMSRIAPLREVGDASQPSEAVLLRLDGTTLEVEAVSVLTVWEGKPAYQVIFRDLTTQKAAEETLRFQAALV
NHVSDAIIATTSTGMVTSWNPAAEAIYRRSASDVLGMPIGEAVGAPLDPGAIITEGGVLSTTQYASDGMALAVRVSAAVM
ENGFVLVCSDYTALLRVERRFQTVVALLEEGVIVLDGDGYVESVNPAALRILGVSDRSALDDPVRRAATLPMYDAQGRLL
DHGRGAVREFLRTGTPKTGFIVGIDRPSDGTRVWLSVNSRSLNPVDPEDATLLISFTDVTAERQASQYLAHQAAHDTLTG
LPNRTSILARIDEQRYCGAPDQLLTAVLFIDLDNFKGINDSLGHDVGDVVLQTAAQRLRAGLRSRDVVGRFGGDEFVALI
LGKITHTELSKVVDRMHAALSEPTYVADAVLHLRASIGVVAIKGDDPRNIGQILRDADTAMYRAKLSGEGTSYYTDTFNQ
QPS

Sequences:

>Translated_563_residues
MLETVRSVMVHSGECSAESTADKEHRHHDLVAQRYQRLVDHSPNMTCVHESGRVTYLNPVGVKWMAAQSPEQIIGHPLIE
FVHPDSMPAMMSRIAPLREVGDASQPSEAVLLRLDGTTLEVEAVSVLTVWEGKPAYQVIFRDLTTQKAAEETLRFQAALV
NHVSDAIIATTSTGMVTSWNPAAEAIYRRSASDVLGMPIGEAVGAPLDPGAIITEGGVLSTTQYASDGMALAVRVSAAVM
ENGFVLVCSDYTALLRVERRFQTVVALLEEGVIVLDGDGYVESVNPAALRILGVSDRSALDDPVRRAATLPMYDAQGRLL
DHGRGAVREFLRTGTPKTGFIVGIDRPSDGTRVWLSVNSRSLNPVDPEDATLLISFTDVTAERQASQYLAHQAAHDTLTG
LPNRTSILARIDEQRYCGAPDQLLTAVLFIDLDNFKGINDSLGHDVGDVVLQTAAQRLRAGLRSRDVVGRFGGDEFVALI
LGKITHTELSKVVDRMHAALSEPTYVADAVLHLRASIGVVAIKGDDPRNIGQILRDADTAMYRAKLSGEGTSYYTDTFNQ
QPS
>Mature_563_residues
MLETVRSVMVHSGECSAESTADKEHRHHDLVAQRYQRLVDHSPNMTCVHESGRVTYLNPVGVKWMAAQSPEQIIGHPLIE
FVHPDSMPAMMSRIAPLREVGDASQPSEAVLLRLDGTTLEVEAVSVLTVWEGKPAYQVIFRDLTTQKAAEETLRFQAALV
NHVSDAIIATTSTGMVTSWNPAAEAIYRRSASDVLGMPIGEAVGAPLDPGAIITEGGVLSTTQYASDGMALAVRVSAAVM
ENGFVLVCSDYTALLRVERRFQTVVALLEEGVIVLDGDGYVESVNPAALRILGVSDRSALDDPVRRAATLPMYDAQGRLL
DHGRGAVREFLRTGTPKTGFIVGIDRPSDGTRVWLSVNSRSLNPVDPEDATLLISFTDVTAERQASQYLAHQAAHDTLTG
LPNRTSILARIDEQRYCGAPDQLLTAVLFIDLDNFKGINDSLGHDVGDVVLQTAAQRLRAGLRSRDVVGRFGGDEFVALI
LGKITHTELSKVVDRMHAALSEPTYVADAVLHLRASIGVVAIKGDDPRNIGQILRDADTAMYRAKLSGEGTSYYTDTFNQ
QPS

Specific function: Unknown

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=302, Percent_Identity=28.1456953642384, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788381, Length=299, Percent_Identity=27.7591973244147, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=33.9181286549708, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081977, Length=174, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=31.8435754189944, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87081881, Length=190, Percent_Identity=34.7368421052632, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=262, Percent_Identity=29.7709923664122, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1787816, Length=193, Percent_Identity=29.0155440414508, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787262, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788085, Length=196, Percent_Identity=28.0612244897959, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1788956, Length=117, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=27.7173913043478, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 61002; Mature: 61002

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETVRSVMVHSGECSAESTADKEHRHHDLVAQRYQRLVDHSPNMTCVHESGRVTYLNPV
CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCC
GVKWMAAQSPEQIIGHPLIEFVHPDSMPAMMSRIAPLREVGDASQPSEAVLLRLDGTTLE
CCEEEECCCCHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEE
VEAVSVLTVWEGKPAYQVIFRDLTTQKAAEETLRFQAALVNHVSDAIIATTSTGMVTSWN
EEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEECCC
PAAEAIYRRSASDVLGMPIGEAVGAPLDPGAIITEGGVLSTTQYASDGMALAVRVSAAVM
HHHHHHHHCCCCHHCCCCCHHHCCCCCCCCCEEECCCCEEEHHHCCCCEEEEEEEEHHHH
ENGFVLVCSDYTALLRVERRFQTVVALLEEGVIVLDGDGYVESVNPAALRILGVSDRSAL
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCHHHEEEEECCCCCHH
DDPVRRAATLPMYDAQGRLLDHGRGAVREFLRTGTPKTGFIVGIDRPSDGTRVWLSVNSR
HHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCC
SLNPVDPEDATLLISFTDVTAERQASQYLAHQAAHDTLTGLPNRTSILARIDEQRYCGAP
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEECCHHCCCCH
DQLLTAVLFIDLDNFKGINDSLGHDVGDVVLQTAAQRLRAGLRSRDVVGRFGGDEFVALI
HHHHHHHHEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHH
LGKITHTELSKVVDRMHAALSEPTYVADAVLHLRASIGVVAIKGDDPRNIGQILRDADTA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
MYRAKLSGEGTSYYTDTFNQQPS
HHEEEECCCCCEEEECCCCCCCC
>Mature Secondary Structure
MLETVRSVMVHSGECSAESTADKEHRHHDLVAQRYQRLVDHSPNMTCVHESGRVTYLNPV
CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCC
GVKWMAAQSPEQIIGHPLIEFVHPDSMPAMMSRIAPLREVGDASQPSEAVLLRLDGTTLE
CCEEEECCCCHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEE
VEAVSVLTVWEGKPAYQVIFRDLTTQKAAEETLRFQAALVNHVSDAIIATTSTGMVTSWN
EEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEECCC
PAAEAIYRRSASDVLGMPIGEAVGAPLDPGAIITEGGVLSTTQYASDGMALAVRVSAAVM
HHHHHHHHCCCCHHCCCCCHHHCCCCCCCCCEEECCCCEEEHHHCCCCEEEEEEEEHHHH
ENGFVLVCSDYTALLRVERRFQTVVALLEEGVIVLDGDGYVESVNPAALRILGVSDRSAL
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCHHHEEEEECCCCCHH
DDPVRRAATLPMYDAQGRLLDHGRGAVREFLRTGTPKTGFIVGIDRPSDGTRVWLSVNSR
HHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCC
SLNPVDPEDATLLISFTDVTAERQASQYLAHQAAHDTLTGLPNRTSILARIDEQRYCGAP
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEECCHHCCCCH
DQLLTAVLFIDLDNFKGINDSLGHDVGDVVLQTAAQRLRAGLRSRDVVGRFGGDEFVALI
HHHHHHHHEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHH
LGKITHTELSKVVDRMHAALSEPTYVADAVLHLRASIGVVAIKGDDPRNIGQILRDADTA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
MYRAKLSGEGTSYYTDTFNQQPS
HHEEEECCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]