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The map label for this gene is yggS [C]

Identifier: 221229916

GI number: 221229916

Start: 1089247

End: 1090029

Strand: Direct

Name: yggS [C]

Synonym: MLBr_00919

Alternate gene names: 221229916

Gene position: 1089247-1090029 (Clockwise)

Preceding gene: 221229915

Following gene: 221229917

Centisome position: 33.33

GC content: 58.24

Gene sequence:

>783_bases
GTGACCGCCATGGCGGCGGATATTGACCTGCAGGGCGACCGCGAATCCGAATTAATGCATGCGCTAGCGACGGTGCGTTC
CCGGCTTGCGGCAGCTTCGCAAGCCGCGGGGCGCAATGTCGGCGAAATCGAACTTCTACCTATTAGTAAATTCTTTCCAG
CAACTGATGTTGCGATTTTGTCTCGATTGGGTTGTCGGTCTGTTGGTGAATCGCGGGCACAGGAAGCTTCAACGAAAGCT
GCTGAATTCGCTGAACTGTTAGGGGTTTCTCGGGAAGAGAAATCGAGTATTCACTGGCACATGGTGGGTCAAATTCAACG
CAACAAGGTGCGGTCGCTGGCGCAGTGGGCGCACACTGCTCATTCGATCGACAGCTTGCAATTGGTCGCTGCGCTCGATC
GGGCGGTAGCAGCGGCGTTGGCCGGCGGTCGTCGCGAGCAGCCGTTGCAGGTCTATGTCCAGATAAGTCTCGACGGAGAC
ATATCGCGCGGTGGTGTCAACGTCACTGCGCCCGGCGCAGTTGACCGGGTCTGCGCACAGGTCGAGGAGTCGAAAAGCCT
GGAGTTGGTCGGGTTGATGGGCATCCCGCCGTTGGGGTGGAATCCCGACCAGGCTTTTGAGCAGTTGCGATTGGAACATC
GCCGGGTGCTGCGGTCACATCCGGATGCGATCGGGCTGTCCGCTGGCATGTCTAACGATTTTGAGATAGCGGTCAAACAT
GGTTCGACGTGTGTGCGTGTCGGTACCGCGCTATTGGGTCCAAGCCGGTTACGGTCGCCGTAA

Upstream 100 bases:

>100_bases
CGATCGAAGACGATCCGCGCCGCACGGTGGCTGATCGGGCGCTGTTCAGTCATCTCCAGACCGTGTCAACAGGGCGACTG
GCTTCGCTGGTCTGGATGGA

Downstream 100 bases:

>100_bases
GTAGTCACTGTAGTCACATCTTCATCACAGACACCAGAGCTTTCAGGCCTAGATAGGGGGTCACGCAATGAGCACACTGC
ACAAGGTCAAGGCCTATTTC

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTAMAADIDLQGDRESELMHALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTKA
AEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAALAGGRREQPLQVYVQISLDGD
ISRGGVNVTAPGAVDRVCAQVEESKSLELVGLMGIPPLGWNPDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKH
GSTCVRVGTALLGPSRLRSP

Sequences:

>Translated_260_residues
MTAMAADIDLQGDRESELMHALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTKA
AEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAALAGGRREQPLQVYVQISLDGD
ISRGGVNVTAPGAVDRVCAQVEESKSLELVGLMGIPPLGWNPDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKH
GSTCVRVGTALLGPSRLRSP
>Mature_259_residues
TAMAADIDLQGDRESELMHALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTKAA
EFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAALAGGRREQPLQVYVQISLDGDI
SRGGVNVTAPGAVDRVCAQVEESKSLELVGLMGIPPLGWNPDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHG
STCVRVGTALLGPSRLRSP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=245, Percent_Identity=32.6530612244898, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1789321, Length=241, Percent_Identity=34.8547717842324, Blast_Score=118, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17533025, Length=245, Percent_Identity=27.3469387755102, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6319435, Length=263, Percent_Identity=28.8973384030418, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45550861, Length=219, Percent_Identity=31.9634703196347, Blast_Score=98, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 27851; Mature: 27720

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAMAADIDLQGDRESELMHALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAIL
CCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCHHHHHHH
SRLGCRSVGESRAQEASTKAAEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEHHHHHHHHHHHHHHHHHHH
HSIDSLQLVAALDRAVAAALAGGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCEEEECCCHHHHHHHH
VEESKSLELVGLMGIPPLGWNPDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKH
HHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEC
GSTCVRVGTALLGPSRLRSP
CCCHHHHHHHHCCCHHCCCC
>Mature Secondary Structure 
TAMAADIDLQGDRESELMHALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAIL
CCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCHHHHHHH
SRLGCRSVGESRAQEASTKAAEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEHHHHHHHHHHHHHHHHHHH
HSIDSLQLVAALDRAVAAALAGGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCEEEECCCHHHHHHHH
VEESKSLELVGLMGIPPLGWNPDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKH
HHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEC
GSTCVRVGTALLGPSRLRSP
CCCHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]