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The map label for this gene is yqgF [C]

Identifier: 221229653

GI number: 221229653

Start: 624895

End: 625449

Strand: Direct

Name: yqgF [C]

Synonym: MLBr_00513

Alternate gene names: 221229653

Gene position: 624895-625449 (Clockwise)

Preceding gene: 221229652

Following gene: 221229654

Centisome position: 19.12

GC content: 62.52

Gene sequence:

>555_bases
GTGTTTTCGTCACAGCACCGCCTGCTCTACCAGCCAAGTGGCCCTGATCTGTCAAAAAACTTAGACCCTGAGCGGGGACG
GCGGCTCGGCATCGATGTGGGTAGTGTGCGCATAGGTGTGGCTTTCAGCGACCCGGACGGCATCCTGGCTACCCCGGTGG
AGACGGTGCGCCGCTACCGTTCCGCTAAGCACTTGCGCCGACTAGCTGAGCTCGTCGTCGAATTGCAGGTTGTCGAGGTG
GTCGTCGGCTTGCCATGGACACTGACCGACCGGACCGGCTCGTCGGCAAAGGACGCCATCGACACCGCCGAGGCACTAGC
ACGGCGGGTTGCTCCGGTACCGGTTCGACTCGTTGATGAGCGGCTGACCACTGTCAGCGCGCAGCGTTTGCTGCGTGCTG
CAGGTGTACGCGCTAAAGACCAGCGGGCGGTGATCGACCAGGCGGCGGCGGTGGTGATTCTGCAAAATTGGCTCGATCAA
TGCCGCGCTGCTACTCCGGCGAGGGCGGATGAGCCTACGACTGGATCGGTAGCTGGAGAAGTTATCGATGGGTGA

Upstream 100 bases:

>100_bases
CGGCGGTAAGGCCGACCTGGCGCAAGGTTCAGGAAAGGACCCGACTGGCATCGACGCTGCGCTTGACACGGTACGTGCAC
AGATAGCGCAGGTCGGTTGA

Downstream 100 bases:

>100_bases
TTCCTATTTAGCACGCCACCGTCTCGCACCCGAGGCGGCCGGGTTGGGCCGCCACCAGATGAGCAGCGGGGACCGGGATG
GGCGCCGTCTGGCCAAGAGC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MFSSQHRLLYQPSGPDLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRLAELVVELQVVEV
VVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDERLTTVSAQRLLRAAGVRAKDQRAVIDQAAAVVILQNWLDQ
CRAATPARADEPTTGSVAGEVIDG

Sequences:

>Translated_184_residues
MFSSQHRLLYQPSGPDLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRLAELVVELQVVEV
VVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDERLTTVSAQRLLRAAGVRAKDQRAVIDQAAAVVILQNWLDQ
CRAATPARADEPTTGSVAGEVIDG
>Mature_184_residues
MFSSQHRLLYQPSGPDLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYRSAKHLRRLAELVVELQVVEV
VVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDERLTTVSAQRLLRAAGVRAKDQRAVIDQAAAVVILQNWLDQ
CRAATPARADEPTTGSVAGEVIDG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_MYCLB (B8ZUJ7)

Other databases:

- EMBL:   FM211192
- RefSeq:   YP_002503069.1
- ProteinModelPortal:   B8ZUJ7
- SMR:   B8ZUJ7
- EnsemblBacteria:   EBMYCT00000087014
- GeneID:   7327198
- GenomeReviews:   FM211192_GR
- GeneTree:   EBGT00050000017543
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 19922; Mature: 19922

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSSQHRLLYQPSGPDLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYR
CCCCCCCEEECCCCCCCCCCCCHHHCCEECCEECCEEEEEEECCCCCCEECCHHHHHHHH
SAKHLRRLAELVVELQVVEVVVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDE
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
RLTTVSAQRLLRAAGVRAKDQRAVIDQAAAVVILQNWLDQCRAATPARADEPTTGSVAGE
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
VIDG
CCCC
>Mature Secondary Structure
MFSSQHRLLYQPSGPDLSKNLDPERGRRLGIDVGSVRIGVAFSDPDGILATPVETVRRYR
CCCCCCCEEECCCCCCCCCCCCHHHCCEECCEECCEEEEEEECCCCCCEECCHHHHHHHH
SAKHLRRLAELVVELQVVEVVVGLPWTLTDRTGSSAKDAIDTAEALARRVAPVPVRLVDE
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
RLTTVSAQRLLRAAGVRAKDQRAVIDQAAAVVILQNWLDQCRAATPARADEPTTGSVAGE
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
VIDG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA