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The map label for this gene is ycaJ [C]

Identifier: 221229651

GI number: 221229651

Start: 619675

End: 621096

Strand: Direct

Name: ycaJ [C]

Synonym: MLBr_00510

Alternate gene names: 221229651

Gene position: 619675-621096 (Clockwise)

Preceding gene: 221229650

Following gene: 221229652

Centisome position: 18.96

GC content: 62.52

Gene sequence:

>1422_bases
GTGGGGACCCGTTGGGTACCCGAATCATCGGGGTTTACCGTGACTGACTTGTCTGTCCTTCGTGGTATTTCTAATGTTGT
GTCCGACAGTCTGTTTGATTTGCCTGGCGCGCCGCAGCCGACCGACTACGGCCTGGGTGGCTCGACCGGGGTCCCGCTGG
CGGTGCGGATGCGTCCGGCATCGCTGGACGAGCTGGTTGGACAGGGTCACTTGTTGGCGCCGGGATCGCCGCTGCGCCGC
CTTGTCGAGGGCTCGGGTGTGGTGTCGGCTATTCTCCATGGCCCGCCGGGATGCGGTAAGACGACCCTGGCAGCGCTGAT
CTCGCAGGCGACCGGGCACCGGTTCGAGGCACTGTCGGCGTTGTCGGCGGGTGTCAAAGACGTTCGAGCTGTTTTGAAGA
TTGCACGTAGTGCGTTGCTCTCGGGGAAGCGGACTGTGCTGTTTATCGACGAAGTGCACCGATTCTCCAAGACTCAGCAG
GACGCCCTGCTTTCCGCGGTGGAGAACCGGGTGGTGTTGCTGGTCGCGGCGACCACCGAGAACCCGTCGTTTTCAGTGGT
GGCGCCGCTACTGTCTCGATCGCTGATCCTTCAGTTGCGGCCGCTGAACGCTGACGACATCCGTGCCGTGGTGCAGCGGG
CCGTCGATGATCCCCGCGGCCTGGGAGGACAGATCGCTGTGGCACCCGAGGCCGTCGACTTGTTAGTTCGGTTGGCCGCC
GGCGACGCCCGACGGGTTTTGACCGCATTGGAGGTGGCCGCCGAAGCCGTCCAAACCGGTGACGAGCTGACGGTCGCGAC
CATTGAACAATCCTTGGACAACGCTGCAGTGCGCTACGACCGGGACGGTGATCAGCATTATGATATCGTCAGCGCCTTCA
TCAAATCGGTGCGTGGCTCTGACGTGGATGCTGCGCTGCACTATCTGGCGCGCATGTTGATTGCCGGGGAGGATCCACGA
TTCATCGCGCGCCGGCTGCTGATCCTGGCTAGCGAAGATATCGGCCTGGCCGACTCGACCGCGCTTCCGCTTGCGGTCGC
TGCCGCGCAGACTGTGCAGCTAATAGGCATGCCCGAAGCCCAGCTGGCGCTGGCACATGCCACCATTCATTTGGCTACTG
CACCGAAATCGAACGCCGTCATGACCGCGCTGGGTTCCGCAATAGATGATATCAAAGCTGGTAAGGCCGGTTTGGTACCG
GCTCACCTGCGCGACGGACATTACTCCGGTGCGGCGGCGCTGGGCAACGCCAAAGGCTACAAGTATTCCCATGATGACCC
CGACGGTGTTGTTGCCCAACAGTATCCGCCGTATGAGCTGGTGGAAGTGGACTACTATCGGCCTACCGGTCGTGGCGGTG
AACGTGAGCTCGTCGGTCGACTAGACCGGCTGCGAGCGATAATCCGCGGCCGGCGAGGCTAG

Upstream 100 bases:

>100_bases
TGGATAGTCGTAAAGGTTCTGGTTGCCGCTCTGCTAGTTGGCCGGGTTAGCTAGATAGTTCGGGGTTGGCTTATTACTTT
GATTCGTTTGCTAGTTTGTT

Downstream 100 bases:

>100_bases
CCGTTCGAGTAGTGTGCGGCTGGCTGCACGCTTGGCATCAGACCAGCTTGAGCACCCTCAAGTGCGCGATCGCCGGATCG
AATTCGGCCACGTTGAGTAC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MGTRWVPESSGFTVTDLSVLRGISNVVSDSLFDLPGAPQPTDYGLGGSTGVPLAVRMRPASLDELVGQGHLLAPGSPLRR
LVEGSGVVSAILHGPPGCGKTTLAALISQATGHRFEALSALSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQ
DALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLNADDIRAVVQRAVDDPRGLGGQIAVAPEAVDLLVRLAA
GDARRVLTALEVAAEAVQTGDELTVATIEQSLDNAAVRYDRDGDQHYDIVSAFIKSVRGSDVDAALHYLARMLIAGEDPR
FIARRLLILASEDIGLADSTALPLAVAAAQTVQLIGMPEAQLALAHATIHLATAPKSNAVMTALGSAIDDIKAGKAGLVP
AHLRDGHYSGAAALGNAKGYKYSHDDPDGVVAQQYPPYELVEVDYYRPTGRGGERELVGRLDRLRAIIRGRRG

Sequences:

>Translated_473_residues
MGTRWVPESSGFTVTDLSVLRGISNVVSDSLFDLPGAPQPTDYGLGGSTGVPLAVRMRPASLDELVGQGHLLAPGSPLRR
LVEGSGVVSAILHGPPGCGKTTLAALISQATGHRFEALSALSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQ
DALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLNADDIRAVVQRAVDDPRGLGGQIAVAPEAVDLLVRLAA
GDARRVLTALEVAAEAVQTGDELTVATIEQSLDNAAVRYDRDGDQHYDIVSAFIKSVRGSDVDAALHYLARMLIAGEDPR
FIARRLLILASEDIGLADSTALPLAVAAAQTVQLIGMPEAQLALAHATIHLATAPKSNAVMTALGSAIDDIKAGKAGLVP
AHLRDGHYSGAAALGNAKGYKYSHDDPDGVVAQQYPPYELVEVDYYRPTGRGGERELVGRLDRLRAIIRGRRG
>Mature_472_residues
GTRWVPESSGFTVTDLSVLRGISNVVSDSLFDLPGAPQPTDYGLGGSTGVPLAVRMRPASLDELVGQGHLLAPGSPLRRL
VEGSGVVSAILHGPPGCGKTTLAALISQATGHRFEALSALSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQD
ALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLNADDIRAVVQRAVDDPRGLGGQIAVAPEAVDLLVRLAAG
DARRVLTALEVAAEAVQTGDELTVATIEQSLDNAAVRYDRDGDQHYDIVSAFIKSVRGSDVDAALHYLARMLIAGEDPRF
IARRLLILASEDIGLADSTALPLAVAAAQTVQLIGMPEAQLALAHATIHLATAPKSNAVMTALGSAIDDIKAGKAGLVPA
HLRDGHYSGAAALGNAKGYKYSHDDPDGVVAQQYPPYELVEVDYYRPTGRGGERELVGRLDRLRAIIRGRRG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=40.5895691609977, Blast_Score=281, Evalue=1e-75,
Organism=Homo sapiens, GI18426904, Length=430, Percent_Identity=38.8372093023256, Blast_Score=241, Evalue=1e-63,
Organism=Escherichia coli, GI1787119, Length=424, Percent_Identity=42.2169811320755, Blast_Score=324, Evalue=6e-90,
Organism=Escherichia coli, GI1786676, Length=239, Percent_Identity=28.8702928870293, Blast_Score=62, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=427, Percent_Identity=38.4074941451991, Blast_Score=279, Evalue=5e-76,
Organism=Saccharomyces cerevisiae, GI6324039, Length=229, Percent_Identity=26.2008733624454, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49847; Mature: 49715

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTRWVPESSGFTVTDLSVLRGISNVVSDSLFDLPGAPQPTDYGLGGSTGVPLAVRMRPA
CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC
SLDELVGQGHLLAPGSPLRRLVEGSGVVSAILHGPPGCGKTTLAALISQATGHRFEALSA
CHHHHHCCCCEECCCHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHH
LSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTE
HHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
NPSFSVVAPLLSRSLILQLRPLNADDIRAVVQRAVDDPRGLGGQIAVAPEAVDLLVRLAA
CCCHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHC
GDARRVLTALEVAAEAVQTGDELTVATIEQSLDNAAVRYDRDGDQHYDIVSAFIKSVRGS
CCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHCCC
DVDAALHYLARMLIAGEDPRFIARRLLILASEDIGLADSTALPLAVAAAQTVQLIGMPEA
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEECCCHH
QLALAHATIHLATAPKSNAVMTALGSAIDDIKAGKAGLVPAHLRDGHYSGAAALGNAKGY
HHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHCCCCCCC
KYSHDDPDGVVAQQYPPYELVEVDYYRPTGRGGERELVGRLDRLRAIIRGRRG
CCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GTRWVPESSGFTVTDLSVLRGISNVVSDSLFDLPGAPQPTDYGLGGSTGVPLAVRMRPA
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC
SLDELVGQGHLLAPGSPLRRLVEGSGVVSAILHGPPGCGKTTLAALISQATGHRFEALSA
CHHHHHCCCCEECCCHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHH
LSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTE
HHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
NPSFSVVAPLLSRSLILQLRPLNADDIRAVVQRAVDDPRGLGGQIAVAPEAVDLLVRLAA
CCCHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHC
GDARRVLTALEVAAEAVQTGDELTVATIEQSLDNAAVRYDRDGDQHYDIVSAFIKSVRGS
CCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHCCC
DVDAALHYLARMLIAGEDPRFIARRLLILASEDIGLADSTALPLAVAAAQTVQLIGMPEA
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEECCCHH
QLALAHATIHLATAPKSNAVMTALGSAIDDIKAGKAGLVPAHLRDGHYSGAAALGNAKGY
HHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHCCCCCCC
KYSHDDPDGVVAQQYPPYELVEVDYYRPTGRGGERELVGRLDRLRAIIRGRRG
CCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]