| Definition | Mycobacterium leprae Br4923 chromosome, complete genome. |
|---|---|
| Accession | NC_011896 |
| Length | 3,268,071 |
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The map label for this gene is lppS
Identifier: 221229612
GI number: 221229612
Start: 524938
End: 526152
Strand: Direct
Name: lppS
Synonym: MLBr_00426
Alternate gene names: NA
Gene position: 524938-526152 (Clockwise)
Preceding gene: 221229611
Following gene: 221229615
Centisome position: 16.06
GC content: 57.94
Gene sequence:
>1215_bases GTGGGCACTGCGACCCGCCGGGTTCAGCCCAAAGCGTGGCGGGCGCTGTTAACGCTACTGGTGATTTCGGTTGTTATGCC CGGCGTTGCCTGCAACAGGGGCGGCGGTAACGTACCGGTGAACGTTATCGGTGATAAAGGTACACCATTTGCCGACCTGC TGGTCCCGAAGCTTACTGCTTCGGTGACTGACGGTGCAGTCGGTGTCAATGTGGATATGCCGGTTACGGTGACCGTTGCT GACGGTGTGCTAGCGGCGGTCACCATGATAAACGACAACGGCAGGATGATTAATGGTCAATTTAGCCCCGACGGGCTGCG CTGGTCGACCACCGAGCCGTTAGGCTTCAACAGGTGCTACACGCTGAGCGCGAAGGCGCTCGGGCTAGGTGGGGTGGTGA ACCGCCAGATGACTTTCCAGACTAGTTCTCCCGCGCACCTGACGATGCCTTACGTCAATCCGGGCAACGGCGAGATTGTA GGCATTGGGGAGCCGGTGGCGATCCGGTTCGACGAGAACATAGCAAACCGACTCGCGGCCCAGAAGGCCATCACCATCAC CGCCAACCCGCCCGTTGAGGGTGCGTTCTACTGGTTGAATAACCGCGAAGTACGTTGGCGTCCTGAGCATTTTTGGAAGT CTGGGACGGCTGTTGATGTGGCGGTCAATACTTACGGTGTTGACTTGGGCGAAGGAATGTTCGGCGAGGACAACGTGAAG ACACATTTCACCATCGGTGATGAGGTCTTCGCGACCGCTGACGATGCCACTAAGATGTTGACCGTGCGCGTCAACGGTGA AGTAGTCAAGATCATGCCAACATCGATGGGCAAGGATAGTACTCCGACAGCTAACGGTATCTACATTGTCGGCGCGCGGT TCAAGCACATCATCATGGACTCGTCGACCTACGGAGTTCCCGTCAACTCGCCGAACGGGTATCGCGCCGATGTTGACTGG GCTACGCAGCTGTCCTACAGTGGCGTTTTCTTGCACTCCGCGCCGTGGTCGGTGGGTGCTCAGGGGCATACTAACACCAG CCACGGGTGTTTAAACGTGAGCCCGAGCAATGCGCAATGGTTCTATGATCATGTCAAGCGCGGTGACATCGTCGAGGTTG TCAACACGGTGGGAGACACCCTGCCCGGGGCTGAGGGTCTCGGGGACTGGAATATTCCCTGGGAGCAGTGGAAGGCGGGG AACGCCAACATTTGA
Upstream 100 bases:
>100_bases TCCAGCGCAGCCGTTTATCTGGTCCTAAACTACTGGCCAAGTCTAGAGGTTCAGCTTTGTTGTGAATTGAGTGTGGGGAG GTGAAAGAAGGATGCCGCAT
Downstream 100 bases:
>100_bases CGCTGCGCGTCGTGATCTGACTTGTGGGGTGAGTGACGGGACTCGAACCCGCGACACCCAGGATCACAACCTGGTGCTCT ACCAACTGAACTACACTCAC
Product: putative secreted protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MGTATRRVQPKAWRALLTLLVISVVMPGVACNRGGGNVPVNVIGDKGTPFADLLVPKLTASVTDGAVGVNVDMPVTVTVA DGVLAAVTMINDNGRMINGQFSPDGLRWSTTEPLGFNRCYTLSAKALGLGGVVNRQMTFQTSSPAHLTMPYVNPGNGEIV GIGEPVAIRFDENIANRLAAQKAITITANPPVEGAFYWLNNREVRWRPEHFWKSGTAVDVAVNTYGVDLGEGMFGEDNVK THFTIGDEVFATADDATKMLTVRVNGEVVKIMPTSMGKDSTPTANGIYIVGARFKHIIMDSSTYGVPVNSPNGYRADVDW ATQLSYSGVFLHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRGDIVEVVNTVGDTLPGAEGLGDWNIPWEQWKAG NANI
Sequences:
>Translated_404_residues MGTATRRVQPKAWRALLTLLVISVVMPGVACNRGGGNVPVNVIGDKGTPFADLLVPKLTASVTDGAVGVNVDMPVTVTVA DGVLAAVTMINDNGRMINGQFSPDGLRWSTTEPLGFNRCYTLSAKALGLGGVVNRQMTFQTSSPAHLTMPYVNPGNGEIV GIGEPVAIRFDENIANRLAAQKAITITANPPVEGAFYWLNNREVRWRPEHFWKSGTAVDVAVNTYGVDLGEGMFGEDNVK THFTIGDEVFATADDATKMLTVRVNGEVVKIMPTSMGKDSTPTANGIYIVGARFKHIIMDSSTYGVPVNSPNGYRADVDW ATQLSYSGVFLHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRGDIVEVVNTVGDTLPGAEGLGDWNIPWEQWKAG NANI >Mature_403_residues GTATRRVQPKAWRALLTLLVISVVMPGVACNRGGGNVPVNVIGDKGTPFADLLVPKLTASVTDGAVGVNVDMPVTVTVAD GVLAAVTMINDNGRMINGQFSPDGLRWSTTEPLGFNRCYTLSAKALGLGGVVNRQMTFQTSSPAHLTMPYVNPGNGEIVG IGEPVAIRFDENIANRLAAQKAITITANPPVEGAFYWLNNREVRWRPEHFWKSGTAVDVAVNTYGVDLGEGMFGEDNVKT HFTIGDEVFATADDATKMLTVRVNGEVVKIMPTSMGKDSTPTANGIYIVGARFKHIIMDSSTYGVPVNSPNGYRADVDWA TQLSYSGVFLHSAPWSVGAQGHTNTSHGCLNVSPSNAQWFYDHVKRGDIVEVVNTVGDTLPGAEGLGDWNIPWEQWKAGN ANI
Specific function: Unknown
COG id: COG1376
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the YkuD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005490 [H]
Pfam domain/function: PF03734 YkuD [H]
EC number: NA
Molecular weight: Translated: 43274; Mature: 43143
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTATRRVQPKAWRALLTLLVISVVMPGVACNRGGGNVPVNVIGDKGTPFADLLVPKLTA CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEECCCCCCHHHHHHHHHHC SVTDGAVGVNVDMPVTVTVADGVLAAVTMINDNGRMINGQFSPDGLRWSTTEPLGFNRCY CCCCCEEEEEECCCEEEEECCCEEEEEEEECCCCCEEECEECCCCEEECCCCCCCCCEEE TLSAKALGLGGVVNRQMTFQTSSPAHLTMPYVNPGNGEIVGIGEPVAIRFDENIANRLAA EEEEEEECCCCEECCEEEEECCCCCEEEECEECCCCCEEEECCCCEEEEECCHHHHHHHH QKAITITANPPVEGAFYWLNNREVRWRPEHFWKSGTAVDVAVNTYGVDLGEGMFGEDNVK CEEEEEECCCCCCEEEEEECCCEEEECHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCE THFTIGDEVFATADDATKMLTVRVNGEVVKIMPTSMGKDSTPTANGIYIVGARFKHIIMD EEEEECCEEEEECCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEECCEEEEEEC SSTYGVPVNSPNGYRADVDWATQLSYSGVFLHSAPWSVGAQGHTNTSHGCLNVSPSNAQW CCCCCEECCCCCCEEECCCHHHEEEECEEEEECCCCCCCCCCCCCCCCCEEEECCCCCHH FYDHVKRGDIVEVVNTVGDTLPGAEGLGDWNIPWEQWKAGNANI HHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCC >Mature Secondary Structure GTATRRVQPKAWRALLTLLVISVVMPGVACNRGGGNVPVNVIGDKGTPFADLLVPKLTA CCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEECCCCCCHHHHHHHHHHC SVTDGAVGVNVDMPVTVTVADGVLAAVTMINDNGRMINGQFSPDGLRWSTTEPLGFNRCY CCCCCEEEEEECCCEEEEECCCEEEEEEEECCCCCEEECEECCCCEEECCCCCCCCCEEE TLSAKALGLGGVVNRQMTFQTSSPAHLTMPYVNPGNGEIVGIGEPVAIRFDENIANRLAA EEEEEEECCCCEECCEEEEECCCCCEEEECEECCCCCEEEECCCCEEEEECCHHHHHHHH QKAITITANPPVEGAFYWLNNREVRWRPEHFWKSGTAVDVAVNTYGVDLGEGMFGEDNVK CEEEEEECCCCCCEEEEEECCCEEEECHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCE THFTIGDEVFATADDATKMLTVRVNGEVVKIMPTSMGKDSTPTANGIYIVGARFKHIIMD EEEEECCEEEEECCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEECCEEEEEEC SSTYGVPVNSPNGYRADVDWATQLSYSGVFLHSAPWSVGAQGHTNTSHGCLNVSPSNAQW CCCCCEECCCCCCEEECCCHHHEEEECEEEEECCCCCCCCCCCCCCCCCEEEECCCCCHH FYDHVKRGDIVEVVNTVGDTLPGAEGLGDWNIPWEQWKAGNANI HHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]