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The map label for this gene is csd [H]

Identifier: 221229428

GI number: 221229428

Start: 158083

End: 159279

Strand: Direct

Name: csd [H]

Synonym: MLBr_00117

Alternate gene names: 221229428

Gene position: 158083-159279 (Clockwise)

Preceding gene: 221229415

Following gene: 221229434

Centisome position: 4.84

GC content: 61.82

Gene sequence:

>1197_bases
ATGGCATATGACGCCGCCCGGGTGCGCGGTCTGCACCCGTCCCTGGGTGATGGCTGGGTGCATTTCGATGCGCCGGCTGG
GATGCTGATTCCAGATTCCGTCGCGACCACAGTGTCGACTGCATTCCGCAGATCCAGCTCCACCACATCAGGTGCTCACC
CGTCCGCGCAGCGCAGTGCCGCGGTGCTGGCCGCGGCGCGTGCCTCGGTGGCCGATTTGTTCGGCGCGGACCCAGCTGGT
GTCGTGTTAGCCGCCGACCGCGCGGTCTTATTGTCATCGTTGGCCGCAGCGTCGTCCTCGTGTGCCGGCCTGGGATACGA
GGTGATTGTCAGCCGCCTCGACGACGAGGTGAATATAGCTCCGTGGCTGCGGGCGGCACACCGCCACGGTGCAAAGGTGA
AATGGGCCGAGGTCGATATCGAGACCGGTGAGTTGCCGACGTGGCAGTGGGAGAGCCTGATCGGCGAATCGACCCGACTG
GTGGCCGTTACGTCAGCGTCAGGGACGTTGGGTACCGTTACCGACCTGCGGGCGATGACTAAGCTGGTTCACGATGTTGG
CGGGCTTGTCGTAGTTGATCATTCCGCCGCCTCCCCCTACCGGCTGTTAGATCTCAACGAGACCGAGGTTGACGTGGTGG
CGGTGAACGCTCATGCATGGGGCGGTCCGCCGATCGGGGCTGTGGTGTTTCGCGACCCCGGGTTGATCGACACCTTCACC
TTAGCGTCGACAGACCCCCACGCCGCGGGCCCGGCGCGTCTGGAGGTTGGTTTGCATCAGTTCGGACTGCTGGCCGGTGT
AGTGGACAGCATAGAATACCTTGCTGCACTTGATGAATCGGCTCGTGGCAGCAGGCGCGAACGATTATCGGTGTCAATGC
AATCCGCCGGTTTGTATCTGAACCGGATATTCGACTACCTGATGATGTCGTTGCGATCTTTGTCGTTGGTGATGGTGATC
GGCCGTCCGGAGGTGCGGATACCGGTCGTCAGTTTTGTGCACCAAGGGGTTCCTGCAGACATGGTGGTGCAGCGCCTGGC
TGACAACGGAATTCTGGCGATATGTGACCCAAGGTCACGTGTGCTTGACGTACTCGGCGTAAATGACATCGGCGGCGCGG
TTACTGTCGGGCTAGCGCATTATTCGACGACGGTCGAAGTCGACCAGTTAGTGCGCACGCTGGCGTCGCTTGGCTAG

Upstream 100 bases:

>100_bases
CTTGCTCGCGACGTTCGACTGGTCGGAACGGCTTGGCCGTTTCAGTGGTATCCGCTACCGTCGCGAATTCGCGGAATGGC
GAAACTCTAAGGTGGCTGGC

Downstream 100 bases:

>100_bases
TGGTGCCGCGAGAGTAAAGTCTCGGTTCCCGAGCCTGCGACGGTCAGCACGATCTTCCCGGAAACCTTCCCTGACAACAA
CAGTTGGTGCGCGTCAGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MAYDAARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSSSTTSGAHPSAQRSAAVLAAARASVADLFGADPAG
VVLAADRAVLLSSLAAASSSCAGLGYEVIVSRLDDEVNIAPWLRAAHRHGAKVKWAEVDIETGELPTWQWESLIGESTRL
VAVTSASGTLGTVTDLRAMTKLVHDVGGLVVVDHSAASPYRLLDLNETEVDVVAVNAHAWGGPPIGAVVFRDPGLIDTFT
LASTDPHAAGPARLEVGLHQFGLLAGVVDSIEYLAALDESARGSRRERLSVSMQSAGLYLNRIFDYLMMSLRSLSLVMVI
GRPEVRIPVVSFVHQGVPADMVVQRLADNGILAICDPRSRVLDVLGVNDIGGAVTVGLAHYSTTVEVDQLVRTLASLG

Sequences:

>Translated_398_residues
MAYDAARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSSSTTSGAHPSAQRSAAVLAAARASVADLFGADPAG
VVLAADRAVLLSSLAAASSSCAGLGYEVIVSRLDDEVNIAPWLRAAHRHGAKVKWAEVDIETGELPTWQWESLIGESTRL
VAVTSASGTLGTVTDLRAMTKLVHDVGGLVVVDHSAASPYRLLDLNETEVDVVAVNAHAWGGPPIGAVVFRDPGLIDTFT
LASTDPHAAGPARLEVGLHQFGLLAGVVDSIEYLAALDESARGSRRERLSVSMQSAGLYLNRIFDYLMMSLRSLSLVMVI
GRPEVRIPVVSFVHQGVPADMVVQRLADNGILAICDPRSRVLDVLGVNDIGGAVTVGLAHYSTTVEVDQLVRTLASLG
>Mature_397_residues
AYDAARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSSSTTSGAHPSAQRSAAVLAAARASVADLFGADPAGV
VLAADRAVLLSSLAAASSSCAGLGYEVIVSRLDDEVNIAPWLRAAHRHGAKVKWAEVDIETGELPTWQWESLIGESTRLV
AVTSASGTLGTVTDLRAMTKLVHDVGGLVVVDHSAASPYRLLDLNETEVDVVAVNAHAWGGPPIGAVVFRDPGLIDTFTL
ASTDPHAAGPARLEVGLHQFGLLAGVVDSIEYLAALDESARGSRRERLSVSMQSAGLYLNRIFDYLMMSLRSLSLVMVIG
RPEVRIPVVSFVHQGVPADMVVQRLADNGILAICDPRSRVLDVLGVNDIGGAVTVGLAHYSTTVEVDQLVRTLASLG

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=306, Percent_Identity=24.8366013071895, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1789175, Length=299, Percent_Identity=26.0869565217391, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 41805; Mature: 41674

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYDAARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSSSTTSGAHPSAQRSA
CCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
AVLAAARASVADLFGADPAGVVLAADRAVLLSSLAAASSSCAGLGYEVIVSRLDDEVNIA
HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHH
PWLRAAHRHGAKVKWAEVDIETGELPTWQWESLIGESTRLVAVTSASGTLGTVTDLRAMT
HHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH
KLVHDVGGLVVVDHSAASPYRLLDLNETEVDVVAVNAHAWGGPPIGAVVFRDPGLIDTFT
HHHHHCCCEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEE
LASTDPHAAGPARLEVGLHQFGLLAGVVDSIEYLAALDESARGSRRERLSVSMQSAGLYL
ECCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHEEEHHHCCHHH
NRIFDYLMMSLRSLSLVMVIGRPEVRIPVVSFVHQGVPADMVVQRLADNGILAICDPRSR
HHHHHHHHHHHHHCEEEEEECCCCEEEHHHHHHHCCCCHHHHHHHHHCCCEEEEECCHHH
VLDVLGVNDIGGAVTVGLAHYSTTVEVDQLVRTLASLG
HHHHHCCCCCCCEEEEEEHHCCCCEEHHHHHHHHHHCC
>Mature Secondary Structure 
AYDAARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSSSTTSGAHPSAQRSA
CCCCHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
AVLAAARASVADLFGADPAGVVLAADRAVLLSSLAAASSSCAGLGYEVIVSRLDDEVNIA
HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHH
PWLRAAHRHGAKVKWAEVDIETGELPTWQWESLIGESTRLVAVTSASGTLGTVTDLRAMT
HHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH
KLVHDVGGLVVVDHSAASPYRLLDLNETEVDVVAVNAHAWGGPPIGAVVFRDPGLIDTFT
HHHHHCCCEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEE
LASTDPHAAGPARLEVGLHQFGLLAGVVDSIEYLAALDESARGSRRERLSVSMQSAGLYL
ECCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHEEEHHHCCHHH
NRIFDYLMMSLRSLSLVMVIGRPEVRIPVVSFVHQGVPADMVVQRLADNGILAICDPRSR
HHHHHHHHHHHHHCEEEEEECCCCEEEHHHHHHHCCCCHHHHHHHHHCCCEEEEECCHHH
VLDVLGVNDIGGAVTVGLAHYSTTVEVDQLVRTLASLG
HHHHHCCCCCCCEEEEEEHHCCCCEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]