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The map label for this gene is yebA [H]

Identifier: 220933180

GI number: 220933180

Start: 2565930

End: 2566934

Strand: Reverse

Name: yebA [H]

Synonym: Hore_23480

Alternate gene names: 220933180

Gene position: 2566934-2565930 (Counterclockwise)

Preceding gene: 220933181

Following gene: 220933179

Centisome position: 99.57

GC content: 37.31

Gene sequence:

>1005_bases
GTGGAGAAATGGAGGAAAAAAATTAAAGAATATTTGATGGAAAAAGTGAGCATAACAATAACTCCATCCCCACGGTATAA
AATTAAGACCTTCTCAATGAGAAGAATTACTCCTGTAATCATACTATTAATAATCTGTACCACCATCGGGGTTCTGGGTT
ACCTTTATAAACATTATCAATATAGTTATATAGAGGTAAGCCAGACATTAACTACCCTTCGAGGAGTTAAAGAAGAGAAC
AAAGAACTCAAAGAAGAATTAATGGCCTTAAGCAATGTTACAGAAGAGTTAAAAGAGGATGTCAACAAACTTAAAGAACA
CAAACAGGAAATAAGAAGCATGATTCAACATGATAAAAAAGAAGATGATGAGAATAACGTAAATTTAACTTTACAGACGT
TTTTCTCCTATAATAATGGAATTATCCAGAGTGGTCTGCCGATGGGTGGTAGTGAGTATCATATATACTACCAGGAACCA
GCCAGGTTAATAAAAAGAATGAAACAGACTATTGACCATCTTAAAAAGGAATTACCTGAAGAAAAAAAGGATTACAATAA
GCTGGAGAAATCGGTAAAACACTATAATGCCCTGATGGCAGCTACACCCAGTATCTGGCCTCTAGCCGACAGGGGGCGGG
GCTTTATTACATCTGAATTTGGTTGGAGAAAAGACCCGGCCGATAATAATAGACGTGAATTTCATGATGGACTGGATATT
GGTGTTATGTATAATACACCCGTGCTGGCCACCGCTGATGGCAAAGTTACATTCGCTGGCTGGATGAATGGCTATGGATG
GGTTGTTAAAATATATCATGGATTTGGTTTTGAAACCCGGTATGCCCATTTGAACAGAATTAAGGTTAAAAAGGGCCAAT
GGGTTAAGCGAGGACAGGTAATTGCTTTAAGTGGTAATTCAGGTAAGAGTACAGGTCCTCACCTTCATTATGAAGTCAGA
AAAAACAATATTCCTCAAAATCCTAGAAATTACATAGGGAGGTAA

Upstream 100 bases:

>100_bases
ATTACTAAAGGAGTTTTGTTTTTTTTGGCGAATTAAAGTATATGAAAGTTAATTTTTATTATTTTTTCCTTTACTCAGTT
ACGATTGGGGGTGATAGGGT

Downstream 100 bases:

>100_bases
GAAAGATGCTTGGCAACAAAAATGATGGTAAGGTAACAGAAGAGATGAAAAGCAAAGTAGAAACTATTCTAGGAAATGGT
ACAAAAATAGAGGGGGACCT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MEKWRKKIKEYLMEKVSITITPSPRYKIKTFSMRRITPVIILLIICTTIGVLGYLYKHYQYSYIEVSQTLTTLRGVKEEN
KELKEELMALSNVTEELKEDVNKLKEHKQEIRSMIQHDKKEDDENNVNLTLQTFFSYNNGIIQSGLPMGGSEYHIYYQEP
ARLIKRMKQTIDHLKKELPEEKKDYNKLEKSVKHYNALMAATPSIWPLADRGRGFITSEFGWRKDPADNNRREFHDGLDI
GVMYNTPVLATADGKVTFAGWMNGYGWVVKIYHGFGFETRYAHLNRIKVKKGQWVKRGQVIALSGNSGKSTGPHLHYEVR
KNNIPQNPRNYIGR

Sequences:

>Translated_334_residues
MEKWRKKIKEYLMEKVSITITPSPRYKIKTFSMRRITPVIILLIICTTIGVLGYLYKHYQYSYIEVSQTLTTLRGVKEEN
KELKEELMALSNVTEELKEDVNKLKEHKQEIRSMIQHDKKEDDENNVNLTLQTFFSYNNGIIQSGLPMGGSEYHIYYQEP
ARLIKRMKQTIDHLKKELPEEKKDYNKLEKSVKHYNALMAATPSIWPLADRGRGFITSEFGWRKDPADNNRREFHDGLDI
GVMYNTPVLATADGKVTFAGWMNGYGWVVKIYHGFGFETRYAHLNRIKVKKGQWVKRGQVIALSGNSGKSTGPHLHYEVR
KNNIPQNPRNYIGR
>Mature_334_residues
MEKWRKKIKEYLMEKVSITITPSPRYKIKTFSMRRITPVIILLIICTTIGVLGYLYKHYQYSYIEVSQTLTTLRGVKEEN
KELKEELMALSNVTEELKEDVNKLKEHKQEIRSMIQHDKKEDDENNVNLTLQTFFSYNNGIIQSGLPMGGSEYHIYYQEP
ARLIKRMKQTIDHLKKELPEEKKDYNKLEKSVKHYNALMAATPSIWPLADRGRGFITSEFGWRKDPADNNRREFHDGLDI
GVMYNTPVLATADGKVTFAGWMNGYGWVVKIYHGFGFETRYAHLNRIKVKKGQWVKRGQVIALSGNSGKSTGPHLHYEVR
KNNIPQNPRNYIGR

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=123, Percent_Identity=47.1544715447154, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082297, Length=98, Percent_Identity=40.8163265306122, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=37.3737373737374, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 38936; Mature: 38936

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKWRKKIKEYLMEKVSITITPSPRYKIKTFSMRRITPVIILLIICTTIGVLGYLYKHYQ
CHHHHHHHHHHHHHHEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YSYIEVSQTLTTLRGVKEENKELKEELMALSNVTEELKEDVNKLKEHKQEIRSMIQHDKK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EDDENNVNLTLQTFFSYNNGIIQSGLPMGGSEYHIYYQEPARLIKRMKQTIDHLKKELPE
CCCCCCCEEEEEEEECCCCCEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCH
EKKDYNKLEKSVKHYNALMAATPSIWPLADRGRGFITSEFGWRKDPADNNRREFHDGLDI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCE
GVMYNTPVLATADGKVTFAGWMNGYGWVVKIYHGFGFETRYAHLNRIKVKKGQWVKRGQV
EEEECCCEEEECCCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHEEEECCCCEEECCEE
IALSGNSGKSTGPHLHYEVRKNNIPQNPRNYIGR
EEEECCCCCCCCCEEEEEEECCCCCCCHHHHCCC
>Mature Secondary Structure
MEKWRKKIKEYLMEKVSITITPSPRYKIKTFSMRRITPVIILLIICTTIGVLGYLYKHYQ
CHHHHHHHHHHHHHHEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YSYIEVSQTLTTLRGVKEENKELKEELMALSNVTEELKEDVNKLKEHKQEIRSMIQHDKK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EDDENNVNLTLQTFFSYNNGIIQSGLPMGGSEYHIYYQEPARLIKRMKQTIDHLKKELPE
CCCCCCCEEEEEEEECCCCCEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCH
EKKDYNKLEKSVKHYNALMAATPSIWPLADRGRGFITSEFGWRKDPADNNRREFHDGLDI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCCE
GVMYNTPVLATADGKVTFAGWMNGYGWVVKIYHGFGFETRYAHLNRIKVKKGQWVKRGQV
EEEECCCEEEECCCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHEEEECCCCEEECCEE
IALSGNSGKSTGPHLHYEVRKNNIPQNPRNYIGR
EEEECCCCCCCCCEEEEEEECCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]