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The map label for this gene is yvoA [H]

Identifier: 220933126

GI number: 220933126

Start: 2504896

End: 2505654

Strand: Reverse

Name: yvoA [H]

Synonym: Hore_22940

Alternate gene names: 220933126

Gene position: 2505654-2504896 (Counterclockwise)

Preceding gene: 220933127

Following gene: 220933125

Centisome position: 97.19

GC content: 46.25

Gene sequence:

>759_bases
ATGAATAACCTGAAAGAAATGCCACCGGTTAATAAAAATAGCCCCATCCCCCTTTATTACCAGCTTAAGGACCTGTTAAT
CAGGGCTATTAAAGAGGGAAGCCTTAAACCAGGTGACCGGATACCCTCAGAGCGGGAGCTGGCCGAATATCATGATATCA
GCCGGATGACTGTTCATAAGGCCATTGAACAGCTTGTGCAGGAGAATTACCTCTACCGGGAGAAGGGAAAGGGTACTTTT
GTCGCCCGGAAGAAAAAGAGCCGGACTATCTCCCCCCTGGCCAGCTTTTCGGCCGAGATGAAGGCCCAGGGCCTCAGAGC
AAAAACCATCATTATCGACTGGGAGATGAAAGAGGCAGATGATGAACTAGCACAACACCTGAAGTTATCACCCGGAGAGA
AGGTCTACTCCCTTACCAGGCTCAGGCTTGTTGAAGATAAACCCTTTCTCCTGGAGGAATCTTATCTACCGGTCAAGCTC
TGTCCGGACCTGAAGCGGACTGAACTTGAGGGGAGCTCCCTTTACACCATCTTAAGGGAGAAGTATCATTACAATATGAA
AAAGGCTGAAGCCACCGTTGAGCCCGTCCTTTTAATAGATGGGATAGCTGAGAAACTTAAAGTGGAAGAAGGGTCAATGG
GCCTTAAGTTTTGCCAGACTACCTATCTTTCCAGCAAAACCCCAATTGAATATACCAGGGCTCATTACCGCAGTGATGAG
TATAAATTTAAATTAAAATTTAATTTTAAAGAAGGGTGA

Upstream 100 bases:

>100_bases
GTTTTTCACAGTGCCTGGTTTTAAGATGCCATTAAAAATCTATTATTGTAAATTTTTATTATTAAATCCACTTATTTAAA
GAGAAAAGGAGGCCATGAGA

Downstream 100 bases:

>100_bases
CCGACAGGAGGGATACATCTTTGAAAGCACTTAAAAATATTAAACTGGTTACAATAGAAGGGATTTTTACCGGGAAAGCG
GTCCTTTTTGAAGATAGGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MNNLKEMPPVNKNSPIPLYYQLKDLLIRAIKEGSLKPGDRIPSERELAEYHDISRMTVHKAIEQLVQENYLYREKGKGTF
VARKKKSRTISPLASFSAEMKAQGLRAKTIIIDWEMKEADDELAQHLKLSPGEKVYSLTRLRLVEDKPFLLEESYLPVKL
CPDLKRTELEGSSLYTILREKYHYNMKKAEATVEPVLLIDGIAEKLKVEEGSMGLKFCQTTYLSSKTPIEYTRAHYRSDE
YKFKLKFNFKEG

Sequences:

>Translated_252_residues
MNNLKEMPPVNKNSPIPLYYQLKDLLIRAIKEGSLKPGDRIPSERELAEYHDISRMTVHKAIEQLVQENYLYREKGKGTF
VARKKKSRTISPLASFSAEMKAQGLRAKTIIIDWEMKEADDELAQHLKLSPGEKVYSLTRLRLVEDKPFLLEESYLPVKL
CPDLKRTELEGSSLYTILREKYHYNMKKAEATVEPVLLIDGIAEKLKVEEGSMGLKFCQTTYLSSKTPIEYTRAHYRSDE
YKFKLKFNFKEG
>Mature_252_residues
MNNLKEMPPVNKNSPIPLYYQLKDLLIRAIKEGSLKPGDRIPSERELAEYHDISRMTVHKAIEQLVQENYLYREKGKGTF
VARKKKSRTISPLASFSAEMKAQGLRAKTIIIDWEMKEADDELAQHLKLSPGEKVYSLTRLRLVEDKPFLLEESYLPVKL
CPDLKRTELEGSSLYTILREKYHYNMKKAEATVEPVLLIDGIAEKLKVEEGSMGLKFCQTTYLSSKTPIEYTRAHYRSDE
YKFKLKFNFKEG

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=229, Percent_Identity=31.0043668122271, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87082252, Length=233, Percent_Identity=25.7510729613734, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1790118, Length=202, Percent_Identity=30.6930693069307, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788418, Length=232, Percent_Identity=28.0172413793103, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790540, Length=215, Percent_Identity=24.6511627906977, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790304, Length=199, Percent_Identity=26.6331658291457, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 29228; Mature: 29228

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLKEMPPVNKNSPIPLYYQLKDLLIRAIKEGSLKPGDRIPSERELAEYHDISRMTVHK
CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AIEQLVQENYLYREKGKGTFVARKKKSRTISPLASFSAEMKAQGLRAKTIIIDWEMKEAD
HHHHHHHHCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHH
DELAQHLKLSPGEKVYSLTRLRLVEDKPFLLEESYLPVKLCPDLKRTELEGSSLYTILRE
HHHHHHCCCCCCHHHHHHHHEEEECCCCCEEECCCCCEEECCCCHHHCCCCHHHHHHHHH
KYHYNMKKAEATVEPVLLIDGIAEKLKVEEGSMGLKFCQTTYLSSKTPIEYTRAHYRSDE
HHHCCHHHHHHHHCCEEEEHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCC
YKFKLKFNFKEG
EEEEEEEECCCC
>Mature Secondary Structure
MNNLKEMPPVNKNSPIPLYYQLKDLLIRAIKEGSLKPGDRIPSERELAEYHDISRMTVHK
CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AIEQLVQENYLYREKGKGTFVARKKKSRTISPLASFSAEMKAQGLRAKTIIIDWEMKEAD
HHHHHHHHCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHH
DELAQHLKLSPGEKVYSLTRLRLVEDKPFLLEESYLPVKLCPDLKRTELEGSSLYTILRE
HHHHHHCCCCCCHHHHHHHHEEEECCCCCEEECCCCCEEECCCCHHHCCCCHHHHHHHHH
KYHYNMKKAEATVEPVLLIDGIAEKLKVEEGSMGLKFCQTTYLSSKTPIEYTRAHYRSDE
HHHCCHHHHHHHHCCEEEEHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCC
YKFKLKFNFKEG
EEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]