Click here to switch to the map view.

The map label for this gene is 220933122

Identifier: 220933122

GI number: 220933122

Start: 2501117

End: 2501953

Strand: Reverse

Name: 220933122

Synonym: Hore_22900

Alternate gene names: NA

Gene position: 2501953-2501117 (Counterclockwise)

Preceding gene: 220933123

Following gene: 220933121

Centisome position: 97.04

GC content: 40.86

Gene sequence:

>837_bases
GTGGGACTGTTGGAGGAAGTCAGGTATTATGAGGAATATGAGATTGATCTTAGGGAATACATAAAGGTTCTATGGGCTGG
CAGATGGTTGGTTATTTCCCTGATGGGGATAGCGATTCTCCTCGTGGGACTGGCCAGCTATTTTCTTATTAATCCCGTTT
ATGAGACTGAAGCTGTTATCAGGCTTACCAGTACCGATGGTATATACAGCAGGCCGGCCAGTATGGCCCGACTTATTAAA
AGCCCTTCCTTACTCAAAGGGGTAATGGAGGGTGTAAACCGGGAATATACCATGTCAGAATTACATACTTTTGCCAGTAA
TAATATAAAGGTTAACCATGTCAGGGAAACCAGTATGCTTGAAATCAAGGTTAGCCATACTGAACCCCGGTTAGCCTTTG
ATATTTTAGAGGGGTTAATCGTAAAAGCACAGGAAAAATCAGATAAGTATTACCGGAAGGTTGTTAATCATAAAGAAACA
TATTTACAGGGGATAATTACTGAACTTGACGAGATTAACCAGCGGATCGGTTCGGTGGAGGAAGGGATAGAAAAGCTTAA
TAACCGTGATTTACCGGCTGTAGAGAAATATGTCCTGTTAAACAGCCTTGATAATAACCTCGATTCTCTCTTAACCTATA
AAAGGGGCCTGGTTAAAGATAAAAACAGGCTGGAGAGAGAGTTATTAACCTTAAGGCCGTTGGAAGTTATAAGCAGCCCC
TATGTTCCGGAAAACCCGGTTAGCCCCAATATAAAGTTAAATGTAGTCATTGCCGGTATTTTAGGATTAATGATGGGAGT
TTTCATTGTTTTTTTCAGGGAATTTATGAAGGAATGA

Upstream 100 bases:

>100_bases
TGTACATATCCAATCAGAGTCTGTGGCTTGATTTTAAAATTATTTTAAAAACTATATATGTAGTAATTTTCGGGCATGGC
GCCAGATAACGGAGGAAAGG

Downstream 100 bases:

>100_bases
TGATTTGCAGGTAGTATAATATGCAGAAAGGGTTGAAAATTCAGGTGGAAGAAAAGAGAAATTATGATGAATATGAAATA
GATTTAAGGGAATATATCAG

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: Lipopolysaccharide Biosynthesis

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MGLLEEVRYYEEYEIDLREYIKVLWAGRWLVISLMGIAILLVGLASYFLINPVYETEAVIRLTSTDGIYSRPASMARLIK
SPSLLKGVMEGVNREYTMSELHTFASNNIKVNHVRETSMLEIKVSHTEPRLAFDILEGLIVKAQEKSDKYYRKVVNHKET
YLQGIITELDEINQRIGSVEEGIEKLNNRDLPAVEKYVLLNSLDNNLDSLLTYKRGLVKDKNRLERELLTLRPLEVISSP
YVPENPVSPNIKLNVVIAGILGLMMGVFIVFFREFMKE

Sequences:

>Translated_278_residues
MGLLEEVRYYEEYEIDLREYIKVLWAGRWLVISLMGIAILLVGLASYFLINPVYETEAVIRLTSTDGIYSRPASMARLIK
SPSLLKGVMEGVNREYTMSELHTFASNNIKVNHVRETSMLEIKVSHTEPRLAFDILEGLIVKAQEKSDKYYRKVVNHKET
YLQGIITELDEINQRIGSVEEGIEKLNNRDLPAVEKYVLLNSLDNNLDSLLTYKRGLVKDKNRLERELLTLRPLEVISSP
YVPENPVSPNIKLNVVIAGILGLMMGVFIVFFREFMKE
>Mature_277_residues
GLLEEVRYYEEYEIDLREYIKVLWAGRWLVISLMGIAILLVGLASYFLINPVYETEAVIRLTSTDGIYSRPASMARLIKS
PSLLKGVMEGVNREYTMSELHTFASNNIKVNHVRETSMLEIKVSHTEPRLAFDILEGLIVKAQEKSDKYYRKVVNHKETY
LQGIITELDEINQRIGSVEEGIEKLNNRDLPAVEKYVLLNSLDNNLDSLLTYKRGLVKDKNRLERELLTLRPLEVISSPY
VPENPVSPNIKLNVVIAGILGLMMGVFIVFFREFMKE

Specific function: Unknown

COG id: COG3944

COG function: function code M; Capsular polysaccharide biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31929; Mature: 31798

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLEEVRYYEEYEIDLREYIKVLWAGRWLVISLMGIAILLVGLASYFLINPVYETEAVI
CCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
RLTSTDGIYSRPASMARLIKSPSLLKGVMEGVNREYTMSELHTFASNNIKVNHVRETSML
EEECCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCEEE
EIKVSHTEPRLAFDILEGLIVKAQEKSDKYYRKVVNHKETYLQGIITELDEINQRIGSVE
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
EGIEKLNNRDLPAVEKYVLLNSLDNNLDSLLTYKRGLVKDKNRLERELLTLRPLEVISSP
HHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC
YVPENPVSPNIKLNVVIAGILGLMMGVFIVFFREFMKE
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GLLEEVRYYEEYEIDLREYIKVLWAGRWLVISLMGIAILLVGLASYFLINPVYETEAVI
CHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
RLTSTDGIYSRPASMARLIKSPSLLKGVMEGVNREYTMSELHTFASNNIKVNHVRETSML
EEECCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCEEE
EIKVSHTEPRLAFDILEGLIVKAQEKSDKYYRKVVNHKETYLQGIITELDEINQRIGSVE
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
EGIEKLNNRDLPAVEKYVLLNSLDNNLDSLLTYKRGLVKDKNRLERELLTLRPLEVISSP
HHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC
YVPENPVSPNIKLNVVIAGILGLMMGVFIVFFREFMKE
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA