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The map label for this gene is rbsB [H]

Identifier: 220933103

GI number: 220933103

Start: 2479005

End: 2479931

Strand: Reverse

Name: rbsB [H]

Synonym: Hore_22710

Alternate gene names: 220933103

Gene position: 2479931-2479005 (Counterclockwise)

Preceding gene: 220933104

Following gene: 220933102

Centisome position: 96.19

GC content: 42.83

Gene sequence:

>927_bases
ATGACAAATAAAGCAAAAGGTTTAGTAGTATTACTGGTAGCGGTGATGGTTTTAGGTTTAAGTCAATTTGCCCTGGCTGA
TGATATTACCATAGGGGCTTCTTTACTGACACAGCAGCATCCCTTTTATGTCCAGCTAAAACAGGCTATGGAAAAAGCTG
CTGACGATAATGGTGTTGAATTAATAGTTTCTATTGCCAATCAGGATTTAAACAAACAGATTTCTGATGTTGAAGACTTT
ATCGTCAGGGGTGTTGATGCTATTGTCCTGAGTCCGGTTGATTCCAAGGGTGTTGTCGGGGCTATTATTAAAGCTAAAAG
GGCCGGCATCCCTGTAATCACTGTTGATATCTCTGCTGAAGGTGTAGAAGTAGATGCTCATGTTGCTACTGACAACTATT
ATGGTGGCAGAATCGCTGGAGAAACCATGGCTAAAGTTTTAAATGGAAAAGGACAGGTTGCCATTATTGACTACCCTGTA
GTTCAGTCTGTAAGGGACAGGGTTGCCGGTTTTAAAGAAGCTGTCAGTAAATACCCCGGTATTGAAATTGTTGCTATTCA
GCCCGGTATCACCAGACCTGAGGCTTTAAATACTGCCCAGAATATCCTTCAGGCCCATCCTGAAGTAGATGGTATCTTTG
GTTTTGGTGATGACGCTGCCCTGGCTTCTGTAGTGGCTGTTAAATCTGCCGGTATGGAAGATGATGTTAAGGTAATCGGT
TTTGACGGAATGGAAGAAGCCCGCAATGCAGTTAAGAAAGAAGAGTCCTTTGTAGCAGTTGTCTGTCAGTATCCCGGTGA
AATGGGTCGTCTCGGATTGGAAACAGCTCTCAGGGTAATTAAAGGAGAAAAAGTTGAAAAAGAAATCCCGGTTCTACCCG
GTCTTTTCACCAAAGAGGGAGAACAGAAAAAAGTAGTACTTGACTAG

Upstream 100 bases:

>100_bases
TAGTTCACGGGTAAACTCTGGAGTTGGTCTGAATGTCAGGTTAGAAATCAGAAATATAAAAATAAAAAAACTTAAAAGGC
TTTGGGAGGGAAATTAAATA

Downstream 100 bases:

>100_bases
GCCCTAGCCCATATTTACTTTATATAATTGAGGTGCAGTCCGGTAAAAGTCTCTTTTACCGGACTGTGCACTCTTTAATT
AAGTATACTTTTGAGGTGGT

Product: sugar ABC transporter periplasmic protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MTNKAKGLVVLLVAVMVLGLSQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF
IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVDAHVATDNYYGGRIAGETMAKVLNGKGQVAIIDYPV
VQSVRDRVAGFKEAVSKYPGIEIVAIQPGITRPEALNTAQNILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIG
FDGMEEARNAVKKEESFVAVVCQYPGEMGRLGLETALRVIKGEKVEKEIPVLPGLFTKEGEQKKVVLD

Sequences:

>Translated_308_residues
MTNKAKGLVVLLVAVMVLGLSQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF
IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVDAHVATDNYYGGRIAGETMAKVLNGKGQVAIIDYPV
VQSVRDRVAGFKEAVSKYPGIEIVAIQPGITRPEALNTAQNILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIG
FDGMEEARNAVKKEESFVAVVCQYPGEMGRLGLETALRVIKGEKVEKEIPVLPGLFTKEGEQKKVVLD
>Mature_307_residues
TNKAKGLVVLLVAVMVLGLSQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDFI
VRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVDAHVATDNYYGGRIAGETMAKVLNGKGQVAIIDYPVV
QSVRDRVAGFKEAVSKYPGIEIVAIQPGITRPEALNTAQNILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIGF
DGMEEARNAVKKEESFVAVVCQYPGEMGRLGLETALRVIKGEKVEKEIPVLPGLFTKEGEQKKVVLD

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=297, Percent_Identity=37.037037037037, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1790526, Length=288, Percent_Identity=31.25, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788898, Length=319, Percent_Identity=29.7805642633229, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790674, Length=243, Percent_Identity=27.1604938271605, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32722; Mature: 32591

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKAKGLVVLLVAVMVLGLSQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVE
CCCCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
LIVSIANQDLNKQISDVEDFIVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAE
EEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCC
GVEVDAHVATDNYYGGRIAGETMAKVLNGKGQVAIIDYPVVQSVRDRVAGFKEAVSKYPG
CEEEEEEEECCCCCCCEEHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCC
IEIVAIQPGITRPEALNTAQNILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIG
EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCEEEE
FDGMEEARNAVKKEESFVAVVCQYPGEMGRLGLETALRVIKGEKVEKEIPVLPGLFTKEG
CCCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCC
EQKKVVLD
CCCEEECC
>Mature Secondary Structure 
TNKAKGLVVLLVAVMVLGLSQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVE
CCCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
LIVSIANQDLNKQISDVEDFIVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAE
EEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCC
GVEVDAHVATDNYYGGRIAGETMAKVLNGKGQVAIIDYPVVQSVRDRVAGFKEAVSKYPG
CEEEEEEEECCCCCCCEEHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCC
IEIVAIQPGITRPEALNTAQNILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIG
EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCEEEE
FDGMEEARNAVKKEESFVAVVCQYPGEMGRLGLETALRVIKGEKVEKEIPVLPGLFTKEG
CCCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCC
EQKKVVLD
CCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]