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The map label for this gene is ydhD [H]

Identifier: 220933000

GI number: 220933000

Start: 2360203

End: 2361153

Strand: Reverse

Name: ydhD [H]

Synonym: Hore_21670

Alternate gene names: 220933000

Gene position: 2361153-2360203 (Counterclockwise)

Preceding gene: 220933001

Following gene: 220932999

Centisome position: 91.58

GC content: 37.22

Gene sequence:

>951_bases
ATGCTGAAAATACTGGGTTACTATCTCTCCGGTAACAGATCTTCCCGGGAGTCTTTTTATCTAAGCTATAGACAATTGTA
CCAGGTTATCCCAACATGGCTAGAATTAAAAGGTGATGGAAGCCTTCATGTAAAAGATTTTAAAGATGACCTCGAAATAT
TATCTAAATATAAAACGAGGGAGTCTATCGTTCCCATGGTCCAAAATTTTAATTTAGATTCAAAAGTCAGTAACCAACTT
ATAAATAATAATGACTATAGAAAAAAGGCTATTGATAATCTTTTGATTTTTATGGGGAAACATGGTTTAAGGAAAATTAA
TGTTGACCTCGAGGGGGTTAAAGTTTCCTATAAGAAAAACCTGACCCTCTTCATAAAAGAATTAAGTTCTGTATTGAAGG
AAAAAGGGTATCACTTAACTATATCTATACCGGCCCGTACTGAAAATACTAAAGATTATAGCTGGTCCGGGGCCTATGAT
TATGGTAAACTGGGTCTGTTTGTCGATGGAGTAATAATTATGGCCTATGATTATCACTGGAGTGGGGGTCCTCCAGGCCC
TGTTTCACCACTACCCTGGGTCCGGGATGTCCTTGACTATGCTATTATTGAAATTCCGGCTACGAAGATATTTCTGGGTC
TCCCCTTTTATGGTTATGACTGGGAGCTAAATCAAGATAAACCGGCCCGGGGTTTATCACATCACCAGATTTTTTACCTT
ATTAAGGAATATGATAGTCAAGTTGAATGGGATCAGGAATTTAATAGTCCATATTTTAGATATAAACAGGATGGAAAATG
GCATGAGGTCTGGTTTGAAAATAAAACCAGCCTGGCTAAAAAAATAAAACTGGCTGAAGATTTTCAAATAAACGGTGTTG
CCTTCTGGAGACTGGGACTTGAAGATAAAAATTTCTGGAAATTACTTTCAGGAGGTAAAGTTAGAGGGTGA

Upstream 100 bases:

>100_bases
AGTCGGTCTATTATTTGCTGGTTCAGAAAAAGCTACGGTCTGTAACAGGATAACAAATGTTCTAGACTCATTAAATATAG
AGTTTTAGGGAGGTAGTTTT

Downstream 100 bases:

>100_bases
GGGTGCTTTTTGTAGTTAGACCTGATCTGTTTACCGTTAAAGCAGGGGATACTGTACAGGTTTTGATTTTAAAGAAAGCC
CTTGAAAAGTTAGGATTAAG

Product: Inactive glysosyl hydrolase family 18

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MLKILGYYLSGNRSSRESFYLSYRQLYQVIPTWLELKGDGSLHVKDFKDDLEILSKYKTRESIVPMVQNFNLDSKVSNQL
INNNDYRKKAIDNLLIFMGKHGLRKINVDLEGVKVSYKKNLTLFIKELSSVLKEKGYHLTISIPARTENTKDYSWSGAYD
YGKLGLFVDGVIIMAYDYHWSGGPPGPVSPLPWVRDVLDYAIIEIPATKIFLGLPFYGYDWELNQDKPARGLSHHQIFYL
IKEYDSQVEWDQEFNSPYFRYKQDGKWHEVWFENKTSLAKKIKLAEDFQINGVAFWRLGLEDKNFWKLLSGGKVRG

Sequences:

>Translated_316_residues
MLKILGYYLSGNRSSRESFYLSYRQLYQVIPTWLELKGDGSLHVKDFKDDLEILSKYKTRESIVPMVQNFNLDSKVSNQL
INNNDYRKKAIDNLLIFMGKHGLRKINVDLEGVKVSYKKNLTLFIKELSSVLKEKGYHLTISIPARTENTKDYSWSGAYD
YGKLGLFVDGVIIMAYDYHWSGGPPGPVSPLPWVRDVLDYAIIEIPATKIFLGLPFYGYDWELNQDKPARGLSHHQIFYL
IKEYDSQVEWDQEFNSPYFRYKQDGKWHEVWFENKTSLAKKIKLAEDFQINGVAFWRLGLEDKNFWKLLSGGKVRG
>Mature_316_residues
MLKILGYYLSGNRSSRESFYLSYRQLYQVIPTWLELKGDGSLHVKDFKDDLEILSKYKTRESIVPMVQNFNLDSKVSNQL
INNNDYRKKAIDNLLIFMGKHGLRKINVDLEGVKVSYKKNLTLFIKELSSVLKEKGYHLTISIPARTENTKDYSWSGAYD
YGKLGLFVDGVIIMAYDYHWSGGPPGPVSPLPWVRDVLDYAIIEIPATKIFLGLPFYGYDWELNQDKPARGLSHHQIFYL
IKEYDSQVEWDQEFNSPYFRYKQDGKWHEVWFENKTSLAKKIKLAEDFQINGVAFWRLGLEDKNFWKLLSGGKVRG

Specific function: Unknown

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

Organism=Homo sapiens, GI218083233, Length=323, Percent_Identity=24.4582043343653, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI218083215, Length=323, Percent_Identity=24.4582043343653, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI218083182, Length=323, Percent_Identity=24.4582043343653, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI218083142, Length=323, Percent_Identity=24.4582043343653, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI218083269, Length=157, Percent_Identity=31.2101910828025, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4758092, Length=229, Percent_Identity=23.1441048034935, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 36858; Mature: 36858

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKILGYYLSGNRSSRESFYLSYRQLYQVIPTWLELKGDGSLHVKDFKDDLEILSKYKTR
CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHEEECCCCCEEECCHHHHHHHHHHHHHH
ESIVPMVQNFNLDSKVSNQLINNNDYRKKAIDNLLIFMGKHGLRKINVDLEGVKVSYKKN
HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHEECCCCCEEEEEEEEEEEEEEECC
LTLFIKELSSVLKEKGYHLTISIPARTENTKDYSWSGAYDYGKLGLFVDGVIIMAYDYHW
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEEEEEC
SGGPPGPVSPLPWVRDVLDYAIIEIPATKIFLGLPFYGYDWELNQDKPARGLSHHQIFYL
CCCCCCCCCCCHHHHHHHHHHHEECCCCEEEEECCCCCCCEEECCCCCCCCCCCHHEEEE
IKEYDSQVEWDQEFNSPYFRYKQDGKWHEVWFENKTSLAKKIKLAEDFQINGVAFWRLGL
EEHHCCCCCCHHHHCCCCEEECCCCCEEEEEECCHHHHHHHHHHHCCEEECCEEEEEECC
EDKNFWKLLSGGKVRG
CCCHHHHHHCCCCCCC
>Mature Secondary Structure
MLKILGYYLSGNRSSRESFYLSYRQLYQVIPTWLELKGDGSLHVKDFKDDLEILSKYKTR
CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHEEECCCCCEEECCHHHHHHHHHHHHHH
ESIVPMVQNFNLDSKVSNQLINNNDYRKKAIDNLLIFMGKHGLRKINVDLEGVKVSYKKN
HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHEECCCCCEEEEEEEEEEEEEEECC
LTLFIKELSSVLKEKGYHLTISIPARTENTKDYSWSGAYDYGKLGLFVDGVIIMAYDYHW
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEEEEEC
SGGPPGPVSPLPWVRDVLDYAIIEIPATKIFLGLPFYGYDWELNQDKPARGLSHHQIFYL
CCCCCCCCCCCHHHHHHHHHHHEECCCCEEEEECCCCCCCEEECCCCCCCCCCCHHEEEE
IKEYDSQVEWDQEFNSPYFRYKQDGKWHEVWFENKTSLAKKIKLAEDFQINGVAFWRLGL
EEHHCCCCCCHHHHCCCCEEECCCCCEEEEEECCHHHHHHHHHHHCCEEECCEEEEEECC
EDKNFWKLLSGGKVRG
CCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]