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The map label for this gene is yecS [H]

Identifier: 220932712

GI number: 220932712

Start: 2004292

End: 2004942

Strand: Reverse

Name: yecS [H]

Synonym: Hore_18760

Alternate gene names: 220932712

Gene position: 2004942-2004292 (Counterclockwise)

Preceding gene: 220932713

Following gene: 220932711

Centisome position: 77.77

GC content: 41.78

Gene sequence:

>651_bases
ATGAAGGGTTCCCTCCTCCCATTACTGGAGGGGACCCTGGTTACCATAGAATTGACTATTTTAAGCCTGATTTTAGGGTT
AATAGTAGCCGTACCCCTGGCCTTTGGTCAAATTTACGGTAATTTTGCTATAAAATTTCTGGTTTCCATATATGAGCGGG
TTGTAAGGAGTATCCCCCTGATAGTTATTTTATTTCTGGTTCATTATGGCCTGCCCAGAGTGGGTATCAGGTTGACCTTT
TTTGTTGCCAGTGTAGTTGGCCTGGGATTGAGGAGTGCTGCTTACCAGTCTCAGATATTCAGGGGGGCTATTCAATCCAT
TGATAATGGTCAAATGAAAGCAGCTTTATCTTTGGGAATGTCAAAACTTCAGGCCTTTGTAACAGTTATTTTACCTCAGG
CCATTAGATTGATTATTGGACCCTGGACCAATGAGTTCACTATTGTGTTAAAGGATTCATCCCTGGCATATGCCCTGGGA
GTGGTTGAATTGCTGAGACAGGGAAGGTATATTATTTCAACCAGTAATAAACCGATGCCTGTATTTCTGACTGTGGCTGC
CATTTATTTTATCCTTACCATAATAGTTAATAGTATCTTCCGGTATACAGAAAGGAAACTGAGTATACCGGGGTTGGGAA
TAGAGGAGTGA

Upstream 100 bases:

>100_bases
TGAGCCTCCTTGCGGTTACACAAGAAAACAATTAACGGTGTCAAAATAAATGTATTAGTGTTATAAGAAAGGGGGAGCAA
CAATTAATATAACTGGTTTG

Downstream 100 bases:

>100_bases
TTTAATGAAAACACCGGTTTTACAGGTTAATAACCTCAAAAAAAGCTATGGTTCCCATCTGGTTCTCGATGGTATTTCTT
TTTCCCTGAATAAAGGGGAG

Product: polar amino acid ABC transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKGSLLPLLEGTLVTIELTILSLILGLIVAVPLAFGQIYGNFAIKFLVSIYERVVRSIPLIVILFLVHYGLPRVGIRLTF
FVASVVGLGLRSAAYQSQIFRGAIQSIDNGQMKAALSLGMSKLQAFVTVILPQAIRLIIGPWTNEFTIVLKDSSLAYALG
VVELLRQGRYIISTSNKPMPVFLTVAAIYFILTIIVNSIFRYTERKLSIPGLGIEE

Sequences:

>Translated_216_residues
MKGSLLPLLEGTLVTIELTILSLILGLIVAVPLAFGQIYGNFAIKFLVSIYERVVRSIPLIVILFLVHYGLPRVGIRLTF
FVASVVGLGLRSAAYQSQIFRGAIQSIDNGQMKAALSLGMSKLQAFVTVILPQAIRLIIGPWTNEFTIVLKDSSLAYALG
VVELLRQGRYIISTSNKPMPVFLTVAAIYFILTIIVNSIFRYTERKLSIPGLGIEE
>Mature_216_residues
MKGSLLPLLEGTLVTIELTILSLILGLIVAVPLAFGQIYGNFAIKFLVSIYERVVRSIPLIVILFLVHYGLPRVGIRLTF
FVASVVGLGLRSAAYQSQIFRGAIQSIDNGQMKAALSLGMSKLQAFVTVILPQAIRLIIGPWTNEFTIVLKDSSLAYALG
VVELLRQGRYIISTSNKPMPVFLTVAAIYFILTIIVNSIFRYTERKLSIPGLGIEE

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=201, Percent_Identity=35.8208955223881, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1787030, Length=204, Percent_Identity=33.3333333333333, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788645, Length=206, Percent_Identity=30.5825242718447, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1786873, Length=214, Percent_Identity=28.9719626168224, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786874, Length=217, Percent_Identity=29.0322580645161, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1788646, Length=213, Percent_Identity=26.7605633802817, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787086, Length=209, Percent_Identity=29.6650717703349, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787087, Length=223, Percent_Identity=25.1121076233184, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082239, Length=203, Percent_Identity=27.0935960591133, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI48994930, Length=128, Percent_Identity=27.34375, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23713; Mature: 23713

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGSLLPLLEGTLVTIELTILSLILGLIVAVPLAFGQIYGNFAIKFLVSIYERVVRSIPL
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVILFLVHYGLPRVGIRLTFFVASVVGLGLRSAAYQSQIFRGAIQSIDNGQMKAALSLGM
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
SKLQAFVTVILPQAIRLIIGPWTNEFTIVLKDSSLAYALGVVELLRQGRYIISTSNKPMP
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCH
VFLTVAAIYFILTIIVNSIFRYTERKLSIPGLGIEE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKGSLLPLLEGTLVTIELTILSLILGLIVAVPLAFGQIYGNFAIKFLVSIYERVVRSIPL
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVILFLVHYGLPRVGIRLTFFVASVVGLGLRSAAYQSQIFRGAIQSIDNGQMKAALSLGM
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
SKLQAFVTVILPQAIRLIIGPWTNEFTIVLKDSSLAYALGVVELLRQGRYIISTSNKPMP
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCH
VFLTVAAIYFILTIIVNSIFRYTERKLSIPGLGIEE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]