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The map label for this gene is yecS [H]

Identifier: 220932710

GI number: 220932710

Start: 2002867

End: 2003535

Strand: Reverse

Name: yecS [H]

Synonym: Hore_18740

Alternate gene names: 220932710

Gene position: 2003535-2002867 (Counterclockwise)

Preceding gene: 220932711

Following gene: 220932709

Centisome position: 77.71

GC content: 39.76

Gene sequence:

>669_bases
ATGGTAGATTTTATTCAGCTTGTTATACAATCTTTACCAGACTTAATAAAAGGGTTACAGGTGACAATGTTATTAACCCT
GGTTTCCATTGTGTTTGGTTTTATTCTGGGAATTATACTTATAATAGGTAAATTATATGGTTTTAAATTCATTTCCTGGC
TCTGTACTTCCTATATAGAAATAATCCGGGGGACACCTTTGCTGGTTCAGCTCTTTATTTTATACTACGGATTACCCCCT
TATGGTATTAAACTTACCCCCCTGACAGCTGCTATAATTGGCTTTTCTCTAAATAGTGCTGCCTATCAGGCTGAATACCT
CAGGGGGTCGATAAAATCTGTATCAGAGGGGCAGTTGAGGGCAGCCTATTCGATAGGAATGGGAAAGTGGCAGGGCATTT
TTTACGTAGTCCTTCCCCAGGCCCTTATTAAGGTGATTCCTTCCTGGACCAATGAATTTATTTATCTTCTGAAATATACA
TCACTGGCATATATTATTGGAGCCCCGGAGATGATGGCCCAGGCCAAGTTACTGGCCAGCCGAAACTATGAGTATTTTAA
AACCTATCTGGTTGCAGCCGGTATTTATTTAATAGTTGTCCTTTTCTTCACTTCTATTTTCAACTGGCTGGAGAAAAAAT
ACAGTATACCCGGTTTTGGCCGGGATTAG

Upstream 100 bases:

>100_bases
AACAGGGGCCTCCCGAACAAATATTTAATAACCCCAGTATTACACGAACTGGAGATTTCCTGGGAAATATAACCACAATG
TATAATGGGGATGGTGGATA

Downstream 100 bases:

>100_bases
ACAATACCCGGGAAAACCGGGTATTTTTAATGTCTATGAAATAATATAAAAATGTTTTTTGTGGATAATTACTGTATTAA
CAATCATTAAAATCTTTCTT

Product: polar amino acid ABC transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MVDFIQLVIQSLPDLIKGLQVTMLLTLVSIVFGFILGIILIIGKLYGFKFISWLCTSYIEIIRGTPLLVQLFILYYGLPP
YGIKLTPLTAAIIGFSLNSAAYQAEYLRGSIKSVSEGQLRAAYSIGMGKWQGIFYVVLPQALIKVIPSWTNEFIYLLKYT
SLAYIIGAPEMMAQAKLLASRNYEYFKTYLVAAGIYLIVVLFFTSIFNWLEKKYSIPGFGRD

Sequences:

>Translated_222_residues
MVDFIQLVIQSLPDLIKGLQVTMLLTLVSIVFGFILGIILIIGKLYGFKFISWLCTSYIEIIRGTPLLVQLFILYYGLPP
YGIKLTPLTAAIIGFSLNSAAYQAEYLRGSIKSVSEGQLRAAYSIGMGKWQGIFYVVLPQALIKVIPSWTNEFIYLLKYT
SLAYIIGAPEMMAQAKLLASRNYEYFKTYLVAAGIYLIVVLFFTSIFNWLEKKYSIPGFGRD
>Mature_222_residues
MVDFIQLVIQSLPDLIKGLQVTMLLTLVSIVFGFILGIILIIGKLYGFKFISWLCTSYIEIIRGTPLLVQLFILYYGLPP
YGIKLTPLTAAIIGFSLNSAAYQAEYLRGSIKSVSEGQLRAAYSIGMGKWQGIFYVVLPQALIKVIPSWTNEFIYLLKYT
SLAYIIGAPEMMAQAKLLASRNYEYFKTYLVAAGIYLIVVLFFTSIFNWLEKKYSIPGFGRD

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=213, Percent_Identity=46.9483568075117, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1787030, Length=208, Percent_Identity=31.25, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787086, Length=212, Percent_Identity=34.9056603773585, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1786873, Length=214, Percent_Identity=28.9719626168224, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788645, Length=209, Percent_Identity=30.1435406698565, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786874, Length=215, Percent_Identity=28.3720930232558, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787087, Length=206, Percent_Identity=26.2135922330097, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788646, Length=213, Percent_Identity=27.2300469483568, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI48994930, Length=168, Percent_Identity=30.952380952381, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25010; Mature: 25010

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDFIQLVIQSLPDLIKGLQVTMLLTLVSIVFGFILGIILIIGKLYGFKFISWLCTSYIE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIRGTPLLVQLFILYYGLPPYGIKLTPLTAAIIGFSLNSAAYQAEYLRGSIKSVSEGQLR
HHCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AAYSIGMGKWQGIFYVVLPQALIKVIPSWTNEFIYLLKYTSLAYIIGAPEMMAQAKLLAS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RNYEYFKTYLVAAGIYLIVVLFFTSIFNWLEKKYSIPGFGRD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVDFIQLVIQSLPDLIKGLQVTMLLTLVSIVFGFILGIILIIGKLYGFKFISWLCTSYIE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIRGTPLLVQLFILYYGLPPYGIKLTPLTAAIIGFSLNSAAYQAEYLRGSIKSVSEGQLR
HHCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AAYSIGMGKWQGIFYVVLPQALIKVIPSWTNEFIYLLKYTSLAYIIGAPEMMAQAKLLAS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RNYEYFKTYLVAAGIYLIVVLFFTSIFNWLEKKYSIPGFGRD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]