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The map label for this gene is xpsF [H]

Identifier: 220932705

GI number: 220932705

Start: 1996311

End: 1997543

Strand: Reverse

Name: xpsF [H]

Synonym: Hore_18690

Alternate gene names: 220932705

Gene position: 1997543-1996311 (Counterclockwise)

Preceding gene: 220932706

Following gene: 220932704

Centisome position: 77.48

GC content: 39.01

Gene sequence:

>1233_bases
ATGGCTGAATTTATATATGAAGCGTTGACGGAAAATGGAGAAGTTACCACCGGGAGTATTAAAGCCCGAAGCCGGAAAGA
GGCCCTTGAACTGCTCAATGATAGAAGACTATATCCGGTTAGTCTGGGTTATGTACACAGTAAGCGAAATACTGAAGAGG
AACAAAGAAGTAAGTCCACAGGACTTTTGTTTAACTACGGTAATAAACAGGACAACTTAATTTTGTTTACCCGCCAGCTG
GGGAATATGTTGGGGGCCGGGATTCAATTGAGTGAAGCTGTAAGGGTCATTGGTTCCCTTTTAAATCCGGGTGAATTTAA
AGATATTGTTCTGATAATTTATGATTTATTAAAAGAAGGGCAGGAATTCAGCCATATCCTGGAGAGGTTTCCCCGGATTT
TTTCCAGTGCCTATATAAATATGATCAGGGCCGGTGAAGAGAGTGGTTCCATCGGGGTTGTCTGTCGTAGAATTGCCGGG
CATCTGGAGGAGAGTCGGAAACTAAAAAGATTTGTAATATCGAGTTTGATATATCCAGTTGTATTATTTTGTGTATCTGT
TATTGCTATTATTGTCATGTTTGTTTTTGTATTACCGCGTTTTCTGGATATTTACCGGTATTATGGACATTCCCTCCCCT
GGACCACTGAACTACTTTTGAATATTAATCGGTTTCTCTCTGACTATGGATTATATTTAATATTTTTTATAATTATGTGT
CTGGTCACTATCTGGTTTTATTACAGGAGTGAAGGAGGGAAACACCACCTTGATAATTTAATTCTTAAAGTTCCCCTTGT
AAAAAGGTTAATTCTTTTATTATATACTGCCAGAATTGCCAGAAACATGGGAATTATGCTTGAGAGTGGAGTCCCATTAT
TAAAGGCAATTGATATAGCCAGTTCTGTTACGGGGAATGAGATATTTCACCAGGCCTTACAGGAAGCCCGCCAGGCAGTT
AAAAAAGGGGGTCATTTGTCGGGGGCCCTGGACAGAAGTGGTATGTTTCCAGAACTTTTTGTTTATATGGTCGGGGTTGG
GGAAGAGACGGGAAAATTAACAGAGATGTTGTTAGATGTTGCCCGGAATTTTGAGGAAGAATACAGGGAGCTCTTACAAA
GGTTTATGAAGTTATTTGAACCGCTATTAATATTGTTTATGGGACTGGTTATTGGGTTTATTGTTATATCCATGTTACTT
CCCATTTTGGGAATTAATACAATAACTTTTTAG

Upstream 100 bases:

>100_bases
ACGGTTGTATCAAGGTAAAAGACGGTTTAACTTCCATAGATGAAGTGGTCAGGGTTACAACCCAGTAATGATTGAAGGCA
GGTTAAGGTAGGTGGTCAGT

Downstream 100 bases:

>100_bases
GGGGGTTCAACATGTTATTGCGGAATGAAGGTGGATTCAGTTTAATTGAAATACTAATAGCAGTTGTTATTATAGGGTTT
CTGGCAGCTACAATTGGTCC

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MAEFIYEALTENGEVTTGSIKARSRKEALELLNDRRLYPVSLGYVHSKRNTEEEQRSKSTGLLFNYGNKQDNLILFTRQL
GNMLGAGIQLSEAVRVIGSLLNPGEFKDIVLIIYDLLKEGQEFSHILERFPRIFSSAYINMIRAGEESGSIGVVCRRIAG
HLEESRKLKRFVISSLIYPVVLFCVSVIAIIVMFVFVLPRFLDIYRYYGHSLPWTTELLLNINRFLSDYGLYLIFFIIMC
LVTIWFYYRSEGGKHHLDNLILKVPLVKRLILLLYTARIARNMGIMLESGVPLLKAIDIASSVTGNEIFHQALQEARQAV
KKGGHLSGALDRSGMFPELFVYMVGVGEETGKLTEMLLDVARNFEEEYRELLQRFMKLFEPLLILFMGLVIGFIVISMLL
PILGINTITF

Sequences:

>Translated_410_residues
MAEFIYEALTENGEVTTGSIKARSRKEALELLNDRRLYPVSLGYVHSKRNTEEEQRSKSTGLLFNYGNKQDNLILFTRQL
GNMLGAGIQLSEAVRVIGSLLNPGEFKDIVLIIYDLLKEGQEFSHILERFPRIFSSAYINMIRAGEESGSIGVVCRRIAG
HLEESRKLKRFVISSLIYPVVLFCVSVIAIIVMFVFVLPRFLDIYRYYGHSLPWTTELLLNINRFLSDYGLYLIFFIIMC
LVTIWFYYRSEGGKHHLDNLILKVPLVKRLILLLYTARIARNMGIMLESGVPLLKAIDIASSVTGNEIFHQALQEARQAV
KKGGHLSGALDRSGMFPELFVYMVGVGEETGKLTEMLLDVARNFEEEYRELLQRFMKLFEPLLILFMGLVIGFIVISMLL
PILGINTITF
>Mature_409_residues
AEFIYEALTENGEVTTGSIKARSRKEALELLNDRRLYPVSLGYVHSKRNTEEEQRSKSTGLLFNYGNKQDNLILFTRQLG
NMLGAGIQLSEAVRVIGSLLNPGEFKDIVLIIYDLLKEGQEFSHILERFPRIFSSAYINMIRAGEESGSIGVVCRRIAGH
LEESRKLKRFVISSLIYPVVLFCVSVIAIIVMFVFVLPRFLDIYRYYGHSLPWTTELLLNINRFLSDYGLYLIFFIIMCL
VTIWFYYRSEGGKHHLDNLILKVPLVKRLILLLYTARIARNMGIMLESGVPLLKAIDIASSVTGNEIFHQALQEARQAVK
KGGHLSGALDRSGMFPELFVYMVGVGEETGKLTEMLLDVARNFEEEYRELLQRFMKLFEPLLILFMGLVIGFIVISMLLP
ILGINTITF

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=404, Percent_Identity=28.7128712871287, Blast_Score=204, Evalue=8e-54,
Organism=Escherichia coli, GI1786295, Length=397, Percent_Identity=24.1813602015113, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 46731; Mature: 46600

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEFIYEALTENGEVTTGSIKARSRKEALELLNDRRLYPVSLGYVHSKRNTEEEQRSKST
CHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCHHHHHHCCC
GLLFNYGNKQDNLILFTRQLGNMLGAGIQLSEAVRVIGSLLNPGEFKDIVLIIYDLLKEG
CEEEECCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
QEFSHILERFPRIFSSAYINMIRAGEESGSIGVVCRRIAGHLEESRKLKRFVISSLIYPV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFCVSVIAIIVMFVFVLPRFLDIYRYYGHSLPWTTELLLNINRFLSDYGLYLIFFIIMC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVTIWFYYRSEGGKHHLDNLILKVPLVKRLILLLYTARIARNMGIMLESGVPLLKAIDIA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHH
SSVTGNEIFHQALQEARQAVKKGGHLSGALDRSGMFPELFVYMVGVGEETGKLTEMLLDV
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
ARNFEEEYRELLQRFMKLFEPLLILFMGLVIGFIVISMLLPILGINTITF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure 
AEFIYEALTENGEVTTGSIKARSRKEALELLNDRRLYPVSLGYVHSKRNTEEEQRSKST
HHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCHHHHHHCCC
GLLFNYGNKQDNLILFTRQLGNMLGAGIQLSEAVRVIGSLLNPGEFKDIVLIIYDLLKEG
CEEEECCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
QEFSHILERFPRIFSSAYINMIRAGEESGSIGVVCRRIAGHLEESRKLKRFVISSLIYPV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFCVSVIAIIVMFVFVLPRFLDIYRYYGHSLPWTTELLLNINRFLSDYGLYLIFFIIMC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVTIWFYYRSEGGKHHLDNLILKVPLVKRLILLLYTARIARNMGIMLESGVPLLKAIDIA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHH
SSVTGNEIFHQALQEARQAVKKGGHLSGALDRSGMFPELFVYMVGVGEETGKLTEMLLDV
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
ARNFEEEYRELLQRFMKLFEPLLILFMGLVIGFIVISMLLPILGINTITF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]