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The map label for this gene is csrA

Identifier: 220932545

GI number: 220932545

Start: 1827592

End: 1827837

Strand: Reverse

Name: csrA

Synonym: Hore_17090

Alternate gene names: 220932545

Gene position: 1827837-1827592 (Counterclockwise)

Preceding gene: 220932546

Following gene: 220932544

Centisome position: 70.9

GC content: 34.55

Gene sequence:

>246_bases
ATGCTTATATTAACCCGAAAAAAGGATGAAGCCATTATTATTGATGATAAGATAAAGGTAAAAGTGGTTGAAATAGACGG
GAATAAAATTAAACTTGGGATAGAAGCCCCTGATGATGTTACCATTCATAGGGAAGAGGTTTTGAAAGAAATTCTAAAAG
AAAATAAACAGGCCTTGAAGCAAAAGAGGGTTCTTAACAGAGATTATACCAGCCGCATTAAAGAGTTTATAGCGAAAAAG
GGCTAG

Upstream 100 bases:

>100_bases
ATATTGGAAAACAGGTAGTGCTGGATAGTGATAAATATGATCTCAAGTACCCATTATTCAAAAAATTTTCACAGGCCCTG
AAATAGAAAGTGGGATTTTT

Downstream 100 bases:

>100_bases
AAAAAACTCAGAAAATGAGTAAATAAGCTGAATAGGATAGCATAATACAGAAAAGTGACGATAATTTATTATAACAGTAA
TACATTTCTGTAAATTAGTG

Product: carbon storage regulator CsrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MLILTRKKDEAIIIDDKIKVKVVEIDGNKIKLGIEAPDDVTIHREEVLKEILKENKQALKQKRVLNRDYTSRIKEFIAKK
G

Sequences:

>Translated_81_residues
MLILTRKKDEAIIIDDKIKVKVVEIDGNKIKLGIEAPDDVTIHREEVLKEILKENKQALKQKRVLNRDYTSRIKEFIAKK
G
>Mature_81_residues
MLILTRKKDEAIIIDDKIKVKVVEIDGNKIKLGIEAPDDVTIHREEVLKEILKENKQALKQKRVLNRDYTSRIKEFIAKK
G

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=57, Percent_Identity=42.1052631578947, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_HALOH (B8CYT9)

Other databases:

- EMBL:   CP001098
- RefSeq:   YP_002509453.1
- ProteinModelPortal:   B8CYT9
- SMR:   B8CYT9
- GeneID:   7313227
- GenomeReviews:   CP001098_GR
- KEGG:   hor:Hore_17090
- HOGENOM:   HBG724655
- OMA:   SVCVDES
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 9425; Mature: 9425

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRKKDEAIIIDDKIKVKVVEIDGNKIKLGIEAPDDVTIHREEVLKEILKENKQALK
CEEEECCCCCEEEECCCEEEEEEEECCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHH
QKRVLNRDYTSRIKEFIAKKG
HHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLILTRKKDEAIIIDDKIKVKVVEIDGNKIKLGIEAPDDVTIHREEVLKEILKENKQALK
CEEEECCCCCEEEECCCEEEEEEEECCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHH
QKRVLNRDYTSRIKEFIAKKG
HHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA