| Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
|---|---|
| Accession | NC_011899 |
| Length | 2,578,146 |
Click here to switch to the map view.
The map label for this gene is fliF [H]
Identifier: 220932525
GI number: 220932525
Start: 1809171
End: 1810730
Strand: Reverse
Name: fliF [H]
Synonym: Hore_16890
Alternate gene names: 220932525
Gene position: 1810730-1809171 (Counterclockwise)
Preceding gene: 220932526
Following gene: 220932524
Centisome position: 70.23
GC content: 42.95
Gene sequence:
>1560_bases ATGGGTACCTGGTTTCAAGACTACATAGAACAATTTAAAGAATTATGGTCCAATTTAAATAAACGGGCAAAGGTTGTTAT CATATCAGGGGTGGGAGTGGATTTGCTAACCCTGATTTTAATAATAGCTATGGGGAGCAGCCCTGATTATCAACCTTTGT TTAGTAATTTAAACCCCAGAGATGCTGATGCCATTATTGAGAAGCTGGATGAACAGGGGATTCCCTACCGGTTAACAGAT AATGGCCAGACAATCCTGGTTCCTTCTCAGCATGTTTACAAAACCAGGCTTGATATGGCTGGAGAAGGTTTACCATCCCA GGGTGTTGTTGGATTTGAAATCTTTAACCAGAGCAACTTCGGGACAACAGATTTTGAAAGAAAGGTAAATTTTTATAGAG CTCTGGGTGGGGAATTGAGCCGTTCAATTCAGGCCATGGAGGCCATTGAGTATGCCAAGGTTCAGATTACGGCTCCCAAA GAAAGCCTTTTCATTGAGGAGGAGCAACCTGCCGAGGCTTCTGTTTTATTAAAATTTGTTCCCGGGCACAAATTGAGCCC GGACCAGGTCAAGGCTATATCTAACCTGGTTGCCAGCAGTGTTCAGGGACTGGATCCCGATAAGGTTACCATTGTCGATA CCTCAGGTAACCTTCTTTCCCGGAATACTGATAAAGATTTTTATAATAGTCAGCTTACCATGAACCAGTTTGAGATTCAG CGTAAATTTGCTGAATCTCTGGAAAATGACCTCAGGGCCTTTCTGTTTAAGGTACTGGGCCCTGATAATTTTACGGTTCA GGTCAAGGCCTGGTTAAATTTTGATAAACGACAGGTTGAGAGCAAGACCTATTCACCGGTTGTTGGTGATGAGGGAATTG TTCGCAGCCAGCAGGAACATGAGGAAAGTTATGAGGGTGAAAACCCTGTAGCCACAGGAGTTCCAGGGACAACTTCTAAT ATTCCCCAGTACCAGTCAGTTGAAGAAGAAAACAGCGGGGGAACCTATGAAAGCTCTGATGTTATTACCAATTATGAAAT AAATGAAAAGATAGAAAAGCATGTCTATTCCCCTGGTAGTGTGGAAAGGCTTTCAGTAGCTGTTATAGTAAATAGTTCCC TGGAAAGAGATGAGCTTCAAAAGATCAGGAACGCTGTTCAGGCGGCTATTGGATATGACCCTGAACGCGGTGATATGGTA ACTGTGACCAGTATGGACTTCGATGAGACGCTTAAACAGCAGGTGGCACAGGCCCAGTCCTCGGCCCTGCAGGCCCAGAA AACAAGGATGTACATATATGGTGGTCTCATAGTTTTAATACTTATTATATTGTCAATTCTCCTTCTTTCCTTTAAGCGTT CTAAAGAAAGTGAGGAAGATATGGTTGGTAAAGCCATCGACTATATGGTTGGGGAAGAGGCTGAAGAAGAAATGGCTGCT ACAGAGTTAACTGAAGAAGAAAAGAAACGTCAGAAGATGAAGACTGAGATCGCTGAACTTGTTAATGAGAAACCTGATGA GGTTGCCCAGATACTTAAGAGCTGGTTATTAGAGGATTAA
Upstream 100 bases:
>100_bases ATCAAGTACATAAAATCAAGTACATAATTATAACAGGTAAAGTGTGCCGGTATTTTATAAAGATAAAACCTTTATATAAA TAAATGAAAGAGGTTGTAAT
Downstream 100 bases:
>100_bases TTTGGGGGAGGTGTAAAGATGCGGAGAGATGATTTAAGCGGCAAACAGAAGGCTGCTGTATTATTACTCTCCCTTGGACC CGATATTTCGGCCCAGATAT
Product: flagellar M-ring protein FliF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 518
Protein sequence:
>519_residues MGTWFQDYIEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAMGSSPDYQPLFSNLNPRDADAIIEKLDEQGIPYRLTD NGQTILVPSQHVYKTRLDMAGEGLPSQGVVGFEIFNQSNFGTTDFERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPK ESLFIEEEQPAEASVLLKFVPGHKLSPDQVKAISNLVASSVQGLDPDKVTIVDTSGNLLSRNTDKDFYNSQLTMNQFEIQ RKFAESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEHEESYEGENPVATGVPGTTSN IPQYQSVEEENSGGTYESSDVITNYEINEKIEKHVYSPGSVERLSVAVIVNSSLERDELQKIRNAVQAAIGYDPERGDMV TVTSMDFDETLKQQVAQAQSSALQAQKTRMYIYGGLIVLILIILSILLLSFKRSKESEEDMVGKAIDYMVGEEAEEEMAA TELTEEEKKRQKMKTEIAELVNEKPDEVAQILKSWLLED
Sequences:
>Translated_519_residues MGTWFQDYIEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAMGSSPDYQPLFSNLNPRDADAIIEKLDEQGIPYRLTD NGQTILVPSQHVYKTRLDMAGEGLPSQGVVGFEIFNQSNFGTTDFERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPK ESLFIEEEQPAEASVLLKFVPGHKLSPDQVKAISNLVASSVQGLDPDKVTIVDTSGNLLSRNTDKDFYNSQLTMNQFEIQ RKFAESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEHEESYEGENPVATGVPGTTSN IPQYQSVEEENSGGTYESSDVITNYEINEKIEKHVYSPGSVERLSVAVIVNSSLERDELQKIRNAVQAAIGYDPERGDMV TVTSMDFDETLKQQVAQAQSSALQAQKTRMYIYGGLIVLILIILSILLLSFKRSKESEEDMVGKAIDYMVGEEAEEEMAA TELTEEEKKRQKMKTEIAELVNEKPDEVAQILKSWLLED >Mature_518_residues GTWFQDYIEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAMGSSPDYQPLFSNLNPRDADAIIEKLDEQGIPYRLTDN GQTILVPSQHVYKTRLDMAGEGLPSQGVVGFEIFNQSNFGTTDFERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPKE SLFIEEEQPAEASVLLKFVPGHKLSPDQVKAISNLVASSVQGLDPDKVTIVDTSGNLLSRNTDKDFYNSQLTMNQFEIQR KFAESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEHEESYEGENPVATGVPGTTSNI PQYQSVEEENSGGTYESSDVITNYEINEKIEKHVYSPGSVERLSVAVIVNSSLERDELQKIRNAVQAAIGYDPERGDMVT VTSMDFDETLKQQVAQAQSSALQAQKTRMYIYGGLIVLILIILSILLLSFKRSKESEEDMVGKAIDYMVGEEAEEEMAAT ELTEEEKKRQKMKTEIAELVNEKPDEVAQILKSWLLED
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=437, Percent_Identity=33.6384439359268, Blast_Score=230, Evalue=2e-61,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 58178; Mature: 58047
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTWFQDYIEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAMGSSPDYQPLFSNLNPR CCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHCCCCCC DADAIIEKLDEQGIPYRLTDNGQTILVPSQHVYKTRLDMAGEGLPSQGVVGFEIFNQSNF HHHHHHHHHHHCCCCEEECCCCCEEEECCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC GTTDFERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPKESLFIEEEQPAEASVLLKFV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHEEECCCCCCCHHHEEEEC PGHKLSPDQVKAISNLVASSVQGLDPDKVTIVDTSGNLLSRNTDKDFYNSQLTMNQFEIQ CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHH RKFAESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEH HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHCCCCCCCCCCCCHHCCHHHH EESYEGENPVATGVPGTTSNIPQYQSVEEENSGGTYESSDVITNYEINEKIEKHVYSPGS HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHCCCCCC VERLSVAVIVNSSLERDELQKIRNAVQAAIGYDPERGDMVTVTSMDFDETLKQQVAQAQS HHHEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHH SALQAQKTRMYIYGGLIVLILIILSILLLSFKRSKESEEDMVGKAIDYMVGEEAEEEMAA HHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH TELTEEEKKRQKMKTEIAELVNEKPDEVAQILKSWLLED HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC >Mature Secondary Structure GTWFQDYIEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAMGSSPDYQPLFSNLNPR CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHCCCCCC DADAIIEKLDEQGIPYRLTDNGQTILVPSQHVYKTRLDMAGEGLPSQGVVGFEIFNQSNF HHHHHHHHHHHCCCCEEECCCCCEEEECCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC GTTDFERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPKESLFIEEEQPAEASVLLKFV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHEEECCCCCCCHHHEEEEC PGHKLSPDQVKAISNLVASSVQGLDPDKVTIVDTSGNLLSRNTDKDFYNSQLTMNQFEIQ CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHH RKFAESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEH HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHCCCCCCCCCCCCHHCCHHHH EESYEGENPVATGVPGTTSNIPQYQSVEEENSGGTYESSDVITNYEINEKIEKHVYSPGS HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHCCCCCC VERLSVAVIVNSSLERDELQKIRNAVQAAIGYDPERGDMVTVTSMDFDETLKQQVAQAQS HHHEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHH SALQAQKTRMYIYGGLIVLILIILSILLLSFKRSKESEEDMVGKAIDYMVGEEAEEEMAA HHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH TELTEEEKKRQKMKTEIAELVNEKPDEVAQILKSWLLED HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]