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The map label for this gene is fliR [H]

Identifier: 220932507

GI number: 220932507

Start: 1794117

End: 1794896

Strand: Reverse

Name: fliR [H]

Synonym: Hore_16700

Alternate gene names: 220932507

Gene position: 1794896-1794117 (Counterclockwise)

Preceding gene: 220932508

Following gene: 220932506

Centisome position: 69.62

GC content: 38.85

Gene sequence:

>780_bases
ATGACTTTAGAAGATATGCTCGTTAACCAGACATACCAGTTTCTACTTATTATGTTTCGATATTTAGGTCTTTTTTTAAT
AGCACCCGTTTTTGGTAGCAGGGTTTATCCTGTCAGGGTTAAAGTGTCTCTGGCATTGATGTTAACCTTTATTACCCTGC
CGCTAATTGGTGGACAGACCGTGGAACTACCACAGCAGACTGTCGGTATTCTGCTTGATGTGATACGGGAGTCTTTAATA
GGATTTATTATAGGTTATATTTTTTATCTTGTATTCGCTTCAATTCAGCTTGCTGGACAGTTTATTGATGTCAGGATGGG
TTTTGCCATAGCCAATGTTATGGACCCCATTTCAGGAGTTACTGCCCCAGTCGTGGGCCAGTTCAAGAATATAATGGCCA
TACTGGTTTTTCTGGCAATTAACGGGCATCACCTGCTTCTTGAAGGTTTATACAGGTCCTTTCAGATAATACCATTGAGG
GGTTTAACCCTGGGTTCTGAAGTATTTAACCTTTTATTTAGAACCACCGGTAATATGTTTATCATAGCCTTTAAAATTGC
CCTACCGGTGATGGGAACTCTTTTTATTGCCGATGTTGTATTTGGTTTTCTGGCCCGCACTGTTCCCCAGATGAATATTT
TTATTATCGGGCTTCCCATGAAAATATTAATTGGTTTTATAATGTTAATATTATCCCTGGGAGTAGCAGTTTACTTTTTC
CAGGATCTGTTCTCTGAATTTTATCGGGAACTTATCAAAATTATTAAGCTGATGGGTTAG

Upstream 100 bases:

>100_bases
AATAGCTATATTCGGTCCCTGGATGTTGAGCACAATTGTCGATTTTGTGACTTCATTATTTCAGCATATTCCTACATATA
TTGGATAAGGTGAGTTCCTG

Downstream 100 bases:

>100_bases
GGGGGAGAATATGCCGGTAAACCAGTCAGGCGAAAAGACGGAAAAACCGACGCCGAGGCGATTACGGAAAGCCCGTCAGC
AGGGACAGGTTGCCAAGAGT

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTLEDMLVNQTYQFLLIMFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQTVELPQQTVGILLDVIRESLI
GFIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGVTAPVVGQFKNIMAILVFLAINGHHLLLEGLYRSFQIIPLR
GLTLGSEVFNLLFRTTGNMFIIAFKIALPVMGTLFIADVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFF
QDLFSEFYRELIKIIKLMG

Sequences:

>Translated_259_residues
MTLEDMLVNQTYQFLLIMFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQTVELPQQTVGILLDVIRESLI
GFIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGVTAPVVGQFKNIMAILVFLAINGHHLLLEGLYRSFQIIPLR
GLTLGSEVFNLLFRTTGNMFIIAFKIALPVMGTLFIADVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFF
QDLFSEFYRELIKIIKLMG
>Mature_258_residues
TLEDMLVNQTYQFLLIMFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQTVELPQQTVGILLDVIRESLIG
FIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGVTAPVVGQFKNIMAILVFLAINGHHLLLEGLYRSFQIIPLRG
LTLGSEVFNLLFRTTGNMFIIAFKIALPVMGTLFIADVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFFQ
DLFSEFYRELIKIIKLMG

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=239, Percent_Identity=31.7991631799163, Blast_Score=111, Evalue=5e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 29023; Mature: 28892

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEDMLVNQTYQFLLIMFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCC
VELPQQTVGILLDVIRESLIGFIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TAPVVGQFKNIMAILVFLAINGHHLLLEGLYRSFQIIPLRGLTLGSEVFNLLFRTTGNMF
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHCCCCEE
IIAFKIALPVMGTLFIADVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFF
EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
QDLFSEFYRELIKIIKLMG
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLEDMLVNQTYQFLLIMFRYLGLFLIAPVFGSRVYPVRVKVSLALMLTFITLPLIGGQT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCC
VELPQQTVGILLDVIRESLIGFIIGYIFYLVFASIQLAGQFIDVRMGFAIANVMDPISGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TAPVVGQFKNIMAILVFLAINGHHLLLEGLYRSFQIIPLRGLTLGSEVFNLLFRTTGNMF
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHCCCCEE
IIAFKIALPVMGTLFIADVVFGFLARTVPQMNIFIIGLPMKILIGFIMLILSLGVAVYFF
EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
QDLFSEFYRELIKIIKLMG
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]