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The map label for this gene is sdaAB [H]

Identifier: 220932470

GI number: 220932470

Start: 1756338

End: 1756994

Strand: Reverse

Name: sdaAB [H]

Synonym: Hore_16340

Alternate gene names: 220932470

Gene position: 1756994-1756338 (Counterclockwise)

Preceding gene: 220932471

Following gene: 220932469

Centisome position: 68.15

GC content: 40.33

Gene sequence:

>657_bases
TTGGGTGTATTTGATATAATGGGTCCTGTAATGATTGGCCCTTCAAGTTCCCATACTGCAGGTGCTGCCAAAATAGGCCG
CCTGGCCAGGCTTCTTTTCAGGGATAAAATAGAGCAGGCCAGGATTTATTTCCACGGTTCCTTTGCTGAGACCTACCACG
GCCATGGTACCGATAAAGCAGTGGTCGGGGGGTTGCTGGGTTATAAAGTGGATGATACCAGGATAAAAAAATCCCTCGAG
ATAGCCCGACAGAATGGTATTGATGTTAAATTTTATTCAATAAAAATGAAAGATGTTCATCCCAATACAGTTTTAATAAA
ATTGAAAAAAGGGGATAAAGAATTGGAGGTAACTGGTTCATCCATCGGTGGGGGAAATATAGTGGTTCATAATATAGATG
GTTATGAAGTTAATATCAGGGGTAATTATCCAACCCTCTGGGTCCTTCACCGGGATAAACCCGGGGAAGTGGGGATTATT
ACTTCAATTCTCGGTTGCTATAAATTAAATATTGCTTTTATGAGGGTTTTCAGGAAGAAAAGAGGGACGATAGGTTCCAG
TATTATTGAGCTTGACCAGGATGTGGATGAGGATATTATTGATCATTTACAGGGGATGAAAGATATCTTAAAAGTAAGGT
ATATACCCCCTTTATAA

Upstream 100 bases:

>100_bases
GATAACCAGCTGGAAAAGGCTATCAAATATATTAAATCCCTGGTGTCGGAAAGGATGGCCAGTTAAGGATAACTAATTAA
TTTATCAGGAGGGGAAATTA

Downstream 100 bases:

>100_bases
AACCCTCTTGAAAGGTGGTCTATAATGGAGTATTCTACTATCAAAGACTTAATAGACCTGGCTTTTGATCTTGATACCAC
CATTTCGGAGGTTGTCATCA

Product: L-serine ammonia-lyase subunit beta

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MGVFDIMGPVMIGPSSSHTAGAAKIGRLARLLFRDKIEQARIYFHGSFAETYHGHGTDKAVVGGLLGYKVDDTRIKKSLE
IARQNGIDVKFYSIKMKDVHPNTVLIKLKKGDKELEVTGSSIGGGNIVVHNIDGYEVNIRGNYPTLWVLHRDKPGEVGII
TSILGCYKLNIAFMRVFRKKRGTIGSSIIELDQDVDEDIIDHLQGMKDILKVRYIPPL

Sequences:

>Translated_218_residues
MGVFDIMGPVMIGPSSSHTAGAAKIGRLARLLFRDKIEQARIYFHGSFAETYHGHGTDKAVVGGLLGYKVDDTRIKKSLE
IARQNGIDVKFYSIKMKDVHPNTVLIKLKKGDKELEVTGSSIGGGNIVVHNIDGYEVNIRGNYPTLWVLHRDKPGEVGII
TSILGCYKLNIAFMRVFRKKRGTIGSSIIELDQDVDEDIIDHLQGMKDILKVRYIPPL
>Mature_217_residues
GVFDIMGPVMIGPSSSHTAGAAKIGRLARLLFRDKIEQARIYFHGSFAETYHGHGTDKAVVGGLLGYKVDDTRIKKSLEI
ARQNGIDVKFYSIKMKDVHPNTVLIKLKKGDKELEVTGSSIGGGNIVVHNIDGYEVNIRGNYPTLWVLHRDKPGEVGIIT
SILGCYKLNIAFMRVFRKKRGTIGSSIIELDQDVDEDIIDHLQGMKDILKVRYIPPL

Specific function: Deaminates Also Threonine, Particularly When It Is Present In High Concentration. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF01842 ACT; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 24204; Mature: 24072

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVFDIMGPVMIGPSSSHTAGAAKIGRLARLLFRDKIEQARIYFHGSFAETYHGHGTDKA
CCCHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHCCCCCCCHH
VVGGLLGYKVDDTRIKKSLEIARQNGIDVKFYSIKMKDVHPNTVLIKLKKGDKELEVTGS
HHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEECCCCEEEEECC
SIGGGNIVVHNIDGYEVNIRGNYPTLWVLHRDKPGEVGIITSILGCYKLNIAFMRVFRKK
CCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RGTIGSSIIELDQDVDEDIIDHLQGMKDILKVRYIPPL
CCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GVFDIMGPVMIGPSSSHTAGAAKIGRLARLLFRDKIEQARIYFHGSFAETYHGHGTDKA
CCHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHCCCCCCCHH
VVGGLLGYKVDDTRIKKSLEIARQNGIDVKFYSIKMKDVHPNTVLIKLKKGDKELEVTGS
HHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEECCCCEEEEECC
SIGGGNIVVHNIDGYEVNIRGNYPTLWVLHRDKPGEVGIITSILGCYKLNIAFMRVFRKK
CCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RGTIGSSIIELDQDVDEDIIDHLQGMKDILKVRYIPPL
CCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]