Click here to switch to the map view.

The map label for this gene is ycdX [C]

Identifier: 220932426

GI number: 220932426

Start: 1703674

End: 1704414

Strand: Reverse

Name: ycdX [C]

Synonym: Hore_15900

Alternate gene names: 220932426

Gene position: 1704414-1703674 (Counterclockwise)

Preceding gene: 220932427

Following gene: 220932425

Centisome position: 66.11

GC content: 44.8

Gene sequence:

>741_bases
ATGAGGTTTATCGGTGATTATCATACCCACTCCCAATATAGTCATGGAAAAGGAGATTTAAGGGAAAATGTCGAAGAAGG
TATATTAAAGGGATTACAGGAGATAGGTATTGCCGATCACGGGCCACGTTCCTTCAGTATTATTCCTCTGGGGGTTAAAA
AGGCTGAAACCCTTTTGGAGATAAAAAAAGAGGTAGACAGGCTTCAGGGGGAATACCCGGGGATTAAAATACTCTGTGGT
GTTGAAGCCAATATAATTAATGGAGAAGGGGAACTGGATGTACCCCATGAAGTCCTAAAGGAGCTGGATTTTGTTGCCGC
TGGCCTTCATCTCCTGATATTACCCCCTGATTTAAAAACAGCCAGATACCTGATCTGGGATAACCGGATTAGCTATAAAT
GTTTTCCTTCCAGGCAAGAGGAGATCAGGAGTTGGAATACCAGGGCTGTTGTTAATGCCGTTAAAAGATATAATATTGAC
TTTATTACCCATCCGGGTTATGGGGTTGATATTGATACCTGTGAGCTGGGGCAGGTTTGTGCCGGGGAAGGCACTTTGCT
GGAGATAAATACACGCCATTCCCGCCTTGAAGGCTTTATCAGGGCTGCCAGCCAGACAGAGGTTAAGTTTATTGTTAACA
GTGATGCCCATTCCCCCCGGGAGGTGGGGGAGTTGGACAGGGGTTTAAAACTTATAAAAGAGGTGGGTATCTCCCCGGAA
AGGGTAATTAATCTGGTGTAA

Upstream 100 bases:

>100_bases
ATTTTATTAAAAAATATCGGGAAAGGGTTCCTATTATGGAAACGGTTTATGTTGCCTTTTTTCTGGGGATACTCGCCGGA
CGAATGGGGTTGTTGAGTTA

Downstream 100 bases:

>100_bases
TTTGTATCAGGGTCTTCATAATTAGTTCGAGTTGTAAAACCGGAAGACGGTTTCCATGATTATATATATGGGGAGGAAAC
GGGATGGAAGAGACTATATT

Product: PHP domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MRFIGDYHTHSQYSHGKGDLRENVEEGILKGLQEIGIADHGPRSFSIIPLGVKKAETLLEIKKEVDRLQGEYPGIKILCG
VEANIINGEGELDVPHEVLKELDFVAAGLHLLILPPDLKTARYLIWDNRISYKCFPSRQEEIRSWNTRAVVNAVKRYNID
FITHPGYGVDIDTCELGQVCAGEGTLLEINTRHSRLEGFIRAASQTEVKFIVNSDAHSPREVGELDRGLKLIKEVGISPE
RVINLV

Sequences:

>Translated_246_residues
MRFIGDYHTHSQYSHGKGDLRENVEEGILKGLQEIGIADHGPRSFSIIPLGVKKAETLLEIKKEVDRLQGEYPGIKILCG
VEANIINGEGELDVPHEVLKELDFVAAGLHLLILPPDLKTARYLIWDNRISYKCFPSRQEEIRSWNTRAVVNAVKRYNID
FITHPGYGVDIDTCELGQVCAGEGTLLEINTRHSRLEGFIRAASQTEVKFIVNSDAHSPREVGELDRGLKLIKEVGISPE
RVINLV
>Mature_246_residues
MRFIGDYHTHSQYSHGKGDLRENVEEGILKGLQEIGIADHGPRSFSIIPLGVKKAETLLEIKKEVDRLQGEYPGIKILCG
VEANIINGEGELDVPHEVLKELDFVAAGLHLLILPPDLKTARYLIWDNRISYKCFPSRQEEIRSWNTRAVVNAVKRYNID
FITHPGYGVDIDTCELGQVCAGEGTLLEINTRHSRLEGFIRAASQTEVKFIVNSDAHSPREVGELDRGLKLIKEVGISPE
RVINLV

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=257, Percent_Identity=26.0700389105058, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 27560; Mature: 27560

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFIGDYHTHSQYSHGKGDLRENVEEGILKGLQEIGIADHGPRSFSIIPLGVKKAETLLE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHH
IKKEVDRLQGEYPGIKILCGVEANIINGEGELDVPHEVLKELDFVAAGLHLLILPPDLKT
HHHHHHHHCCCCCCEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCC
ARYLIWDNRISYKCFPSRQEEIRSWNTRAVVNAVKRYNIDFITHPGYGVDIDTCELGQVC
EEEEEECCCCCEEECCCHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEE
AGEGTLLEINTRHSRLEGFIRAASQTEVKFIVNSDAHSPREVGELDRGLKLIKEVGISPE
CCCCCEEEEECHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHH
RVINLV
HHEECC
>Mature Secondary Structure
MRFIGDYHTHSQYSHGKGDLRENVEEGILKGLQEIGIADHGPRSFSIIPLGVKKAETLLE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHH
IKKEVDRLQGEYPGIKILCGVEANIINGEGELDVPHEVLKELDFVAAGLHLLILPPDLKT
HHHHHHHHCCCCCCEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCC
ARYLIWDNRISYKCFPSRQEEIRSWNTRAVVNAVKRYNIDFITHPGYGVDIDTCELGQVC
EEEEEECCCCCEEECCCHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEE
AGEGTLLEINTRHSRLEGFIRAASQTEVKFIVNSDAHSPREVGELDRGLKLIKEVGISPE
CCCCCEEEEECHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHH
RVINLV
HHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA