Click here to switch to the map view.

The map label for this gene is treC [C]

Identifier: 220932310

GI number: 220932310

Start: 1567871

End: 1569418

Strand: Reverse

Name: treC [C]

Synonym: Hore_14740

Alternate gene names: 220932310

Gene position: 1569418-1567871 (Counterclockwise)

Preceding gene: 220932311

Following gene: 220932308

Centisome position: 60.87

GC content: 40.76

Gene sequence:

>1548_bases
GTGAAGCTAAAACGCTTGTCTTTCTTCATGTTTGTTACCTTACTGGTATTTATATCTGTTTTTCCTGTTTATGCAAACGA
TTTCGAAAAACATGGTACATATTATGAAATTTTTGTCAGGTCTTTTTATGACTCTGATGGTGACGGAATAGGGGATTTGA
AAGGTATAATAGAAAAACTGGATTATCTTAATGATGGAGACCCTGAAACCATTGCTGATCTGGGGGTTAATGGTATCTGG
TTAATGCCTATCTTTAAATCTCCCTCCTATCATGGCTATGATGTAACCGATTATTATAAGATTAATCCTGACTACGGGAC
TCTGGAAGACTTCCATAAGCTTGTTGAGGCTGCCCATCAAAGGGGAATCAAGGTTATAATTGATTTACCCATCAATCATA
CCAGTGAAAGACATCCCTGGTTTCTCAAGGCTTCCCGGGATAAGAATAGTGAATACAGGGATTATTATGTCTGGGCTGGC
CCCGATACCGATACCAAAGAAACCAAGTTAGATGGAGGCCGGGTCTGGCATCATTCCCCGACCGGTATGTATTATGGGTA
TTTCTGGAGTGGCATGCCTGATTTAAACTATAATAACCCTGAAGTTCAGGAAAAGGTTATTGAGATAGCAAAATACTGGT
TAAAACAGGGGGTTGATGGTTTCAGGCTTGATGGAGCCATGCATATCTTCCCACCGGCCCAGTATGATAAAAACTTTACC
TGGTGGGAGAAGTTCCGTCAGGAAATTGAAGAGGTAAAACCCGTTTACCTGGTGGGTGAGGTCTGGGATATTTCGGAAAC
GGTAGCTCCTTACTTCAAATATGGTTTTGATTCTACCTTTAACTTTAAACTGGCAGAGGCAGTTATCGCTACGGCTAAAG
CTGGATTTCCCTTTGGTTTTAATAAAAAGGCAAAACATATTTACGGGGTATATGACAGGGAGGTTGGATTTGGGAATTAT
ATCGATGCTCCCTTCCTGACCAACCATGATCAGAACCGGATTTTGGACCAGCTTGGGCAGGATCGTAATAAGGCCAGGGT
TGCTGCCAGTATTTATTTGACCTTGCCTGGTAATCCCTTTATTTACTATGGTGAAGAAATCGGTATGAGGGGGCAGGGGC
CCCATGAAGTTATCAGGGAGCCCTTCCAGTGGTATAATGGATCCGGGGAGGGAGAAACATACTGGGAGCCAGCCATGTAT
AATGATGGCTTTACTTCTGTTGAACAGGAAGAAAAGAATCTCGATTCCCTCTTAAATCACTACAGGAGGTTAATCCATTT
CCGGAACGAAAATCCTGTCTTTTATACCGGTAAGATTGAGATTATAAATGGAGGATTAAATGTAGTTGCATTTAGAAGAT
ATAATGATAAGAGGGATTTATATGTCTACCATAACCTGGTAAACAGACCGGTTAAAATAAAAGTGGCTAGTGGTAACTGG
ACCTTATTGTTTAATTCAGGTGATAAGGAAATTACCCCTGTTGAAGATAATAATAAACTTATGTATACTATCCCTGCTTA
TACTACCATTGTTCTGGAAAAGGAGTAA

Upstream 100 bases:

>100_bases
TCCAGTGGTAGGCTGGATTATATAATTTATTGAAATTTTCGATAAATTCCGTTATAATAATATTAAATCTGAAAATATTT
AGTAAAAGGATGTGAGATAT

Downstream 100 bases:

>100_bases
AGGGAGAGGGTGAGTAATAATTATGAAAAGGAGAGGGTAAATCCCTCTCCTTTTTTGTTAAATATTTTTATTATACCTGT
TATAATTGATTTTTTTGATG

Product: alpha amylase

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MKLKRLSFFMFVTLLVFISVFPVYANDFEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIW
LMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAG
PDTDTKETKLDGGRVWHHSPTGMYYGYFWSGMPDLNYNNPEVQEKVIEIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFT
WWEKFRQEIEEVKPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNY
IDAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMY
NDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYTGKIEIINGGLNVVAFRRYNDKRDLYVYHNLVNRPVKIKVASGNW
TLLFNSGDKEITPVEDNNKLMYTIPAYTTIVLEKE

Sequences:

>Translated_515_residues
MKLKRLSFFMFVTLLVFISVFPVYANDFEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIW
LMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAG
PDTDTKETKLDGGRVWHHSPTGMYYGYFWSGMPDLNYNNPEVQEKVIEIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFT
WWEKFRQEIEEVKPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNY
IDAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMY
NDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYTGKIEIINGGLNVVAFRRYNDKRDLYVYHNLVNRPVKIKVASGNW
TLLFNSGDKEITPVEDNNKLMYTIPAYTTIVLEKE
>Mature_515_residues
MKLKRLSFFMFVTLLVFISVFPVYANDFEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIW
LMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAG
PDTDTKETKLDGGRVWHHSPTGMYYGYFWSGMPDLNYNNPEVQEKVIEIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFT
WWEKFRQEIEEVKPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNY
IDAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMY
NDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYTGKIEIINGGLNVVAFRRYNDKRDLYVYHNLVNRPVKIKVASGNW
TLLFNSGDKEITPVEDNNKLMYTIPAYTTIVLEKE

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI187423904, Length=535, Percent_Identity=28.9719626168224, Blast_Score=170, Evalue=3e-42,
Organism=Escherichia coli, GI1790687, Length=536, Percent_Identity=28.7313432835821, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1786604, Length=452, Percent_Identity=25, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1789995, Length=512, Percent_Identity=22.65625, Blast_Score=99, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI32565753, Length=479, Percent_Identity=23.1732776617954, Blast_Score=111, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI25147709, Length=523, Percent_Identity=23.7093690248566, Blast_Score=92, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6322245, Length=391, Percent_Identity=33.2480818414322, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6321726, Length=513, Percent_Identity=28.6549707602339, Blast_Score=159, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6321731, Length=577, Percent_Identity=26.3431542461005, Blast_Score=149, Evalue=7e-37,
Organism=Saccharomyces cerevisiae, GI6319776, Length=577, Percent_Identity=26.3431542461005, Blast_Score=149, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6324416, Length=404, Percent_Identity=29.9504950495049, Blast_Score=149, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6322241, Length=404, Percent_Identity=29.9504950495049, Blast_Score=149, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6322021, Length=404, Percent_Identity=29.9504950495049, Blast_Score=149, Evalue=1e-36,
Organism=Drosophila melanogaster, GI24586589, Length=549, Percent_Identity=30.0546448087432, Blast_Score=196, Evalue=2e-50,
Organism=Drosophila melanogaster, GI45549022, Length=538, Percent_Identity=29.368029739777, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24586593, Length=552, Percent_Identity=28.2608695652174, Blast_Score=182, Evalue=4e-46,
Organism=Drosophila melanogaster, GI24586597, Length=569, Percent_Identity=29.1739894551845, Blast_Score=181, Evalue=1e-45,
Organism=Drosophila melanogaster, GI24586587, Length=482, Percent_Identity=30.2904564315353, Blast_Score=181, Evalue=1e-45,
Organism=Drosophila melanogaster, GI221330053, Length=540, Percent_Identity=29.2592592592593, Blast_Score=179, Evalue=4e-45,
Organism=Drosophila melanogaster, GI24586599, Length=493, Percent_Identity=29.0060851926978, Blast_Score=176, Evalue=3e-44,
Organism=Drosophila melanogaster, GI24586591, Length=496, Percent_Identity=27.6209677419355, Blast_Score=174, Evalue=9e-44,
Organism=Drosophila melanogaster, GI24583745, Length=531, Percent_Identity=27.683615819209, Blast_Score=170, Evalue=2e-42,
Organism=Drosophila melanogaster, GI24583747, Length=215, Percent_Identity=40.9302325581395, Blast_Score=165, Evalue=7e-41,
Organism=Drosophila melanogaster, GI24583749, Length=215, Percent_Identity=40.9302325581395, Blast_Score=164, Evalue=1e-40,
Organism=Drosophila melanogaster, GI281360393, Length=448, Percent_Identity=26.1160714285714, Blast_Score=133, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 59934; Mature: 59934

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKRLSFFMFVTLLVFISVFPVYANDFEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKL
CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCEEEEEEEHHCCCCCCCCHHHHHHHHHH
DYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQ
HCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
RGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHHSP
CCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCEECCCCEEEECCC
TGMYYGYFWSGMPDLNYNNPEVQEKVIEIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFT
CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCCCCCCCH
WWEKFRQEIEEVKPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGF
HHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
NKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPF
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEECCCCE
IYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNH
EEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH
YRRLIHFRNENPVFYTGKIEIINGGLNVVAFRRYNDKRDLYVYHNLVNRPVKIKVASGNW
HHHHHEECCCCCEEEEEEEEEEECCCEEEEEEEECCCCCEEEEEHHHCCCEEEEEECCCE
TLLFNSGDKEITPVEDNNKLMYTIPAYTTIVLEKE
EEEEECCCCEECCCCCCCEEEEEECCEEEEEEECC
>Mature Secondary Structure
MKLKRLSFFMFVTLLVFISVFPVYANDFEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKL
CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCEEEEEEEHHCCCCCCCCHHHHHHHHHH
DYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQ
HCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
RGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHHSP
CCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCEECCCCEEEECCC
TGMYYGYFWSGMPDLNYNNPEVQEKVIEIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFT
CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCCCCCCCH
WWEKFRQEIEEVKPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGF
HHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
NKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPF
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEECCCCE
IYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNH
EEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH
YRRLIHFRNENPVFYTGKIEIINGGLNVVAFRRYNDKRDLYVYHNLVNRPVKIKVASGNW
HHHHHEECCCCCEEEEEEEEEEECCCEEEEEEEECCCCCEEEEEHHHCCCEEEEEECCCE
TLLFNSGDKEITPVEDNNKLMYTIPAYTTIVLEKE
EEEEECCCCEECCCCCCCEEEEEECCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2455281 [H]