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The map label for this gene is radC [C]

Identifier: 220932261

GI number: 220932261

Start: 1512844

End: 1513530

Strand: Reverse

Name: radC [C]

Synonym: Hore_14250

Alternate gene names: 220932261

Gene position: 1513530-1512844 (Counterclockwise)

Preceding gene: 220932262

Following gene: 220932260

Centisome position: 58.71

GC content: 40.61

Gene sequence:

>687_bases
ATGGAGTATCGATATACCATTAAAGAATTACCTGAAGAGGAAAGGCCCCGGGAAAAACTAATAAAACATGGTGCCCGGGC
CCTGTCTAACGCTGAGTTACTGGCCCTGATTATCAGGACCGGTAATAAAAAAAGAACTGCAGTGGAATTATCACAGGACA
TTTTAAATTTTTTTGGGGGGCTTGAGGCTTTAAACGATATTAGTGTTGAAGAAATTACCCGGATAAATGGGGTTGGTCTG
GCTAAAGGGGCCCAGATACAGGCTACTGTAGAGTTGAGCAAGCGATTATTTAAGGCAGGGAAGGATAATAGACCGGTGGT
TAAATCTCCAGGTGATGTAGCCGAGCTGGTAATGCCCGATATGAGGTATTTAAAGCAGGAAGTATTTAAGATTATTCTTT
TTGATATTAAAAACCAGTTAATTGCTATATCAGAGATTTCCCGTGGTGGACTATCAAGTTCTATTGTTCATCCCCGGGAG
GTTTTTAAAGAAGCTATTCGCCGCAGTAGTGCTGCTGTTATTTTAGTTCACAATCACCCCAGTGGAGACCCCAGTCCAAG
TGATGAAGATATTAATGTAACCAGGAGATTAGTGGATTCCGGAAAAATACTGGGGGTAGATGTGCTGGATCATATAATTA
TCGGTGATGGAGTTTACTTAAGCATGAAAAAAGAAAACTTAATTTAA

Upstream 100 bases:

>100_bases
CTAAAAGAGTTTTCCATTGATGTGATTTAGGTCCGGGTTAAACCCGGCCTTCATCAAATTATATATGTTGGTGCTGGTGG
AGAGGAGTAAGGAGTGGAGA

Downstream 100 bases:

>100_bases
CCATACAAAACAAATACTAAATATGGAAAGGAGTACTCGTTATGGTATTTAAATTTATCAGTGCACCATTTTCCCGTGAT
ATGGGTATTGACCTGGGAAC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MEYRYTIKELPEEERPREKLIKHGARALSNAELLALIIRTGNKKRTAVELSQDILNFFGGLEALNDISVEEITRINGVGL
AKGAQIQATVELSKRLFKAGKDNRPVVKSPGDVAELVMPDMRYLKQEVFKIILFDIKNQLIAISEISRGGLSSSIVHPRE
VFKEAIRRSSAAVILVHNHPSGDPSPSDEDINVTRRLVDSGKILGVDVLDHIIIGDGVYLSMKKENLI

Sequences:

>Translated_228_residues
MEYRYTIKELPEEERPREKLIKHGARALSNAELLALIIRTGNKKRTAVELSQDILNFFGGLEALNDISVEEITRINGVGL
AKGAQIQATVELSKRLFKAGKDNRPVVKSPGDVAELVMPDMRYLKQEVFKIILFDIKNQLIAISEISRGGLSSSIVHPRE
VFKEAIRRSSAAVILVHNHPSGDPSPSDEDINVTRRLVDSGKILGVDVLDHIIIGDGVYLSMKKENLI
>Mature_228_residues
MEYRYTIKELPEEERPREKLIKHGARALSNAELLALIIRTGNKKRTAVELSQDILNFFGGLEALNDISVEEITRINGVGL
AKGAQIQATVELSKRLFKAGKDNRPVVKSPGDVAELVMPDMRYLKQEVFKIILFDIKNQLIAISEISRGGLSSSIVHPRE
VFKEAIRRSSAAVILVHNHPSGDPSPSDEDINVTRRLVDSGKILGVDVLDHIIIGDGVYLSMKKENLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=35.6807511737089, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1788997, Length=108, Percent_Identity=42.5925925925926, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI2367100, Length=120, Percent_Identity=39.1666666666667, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788312, Length=114, Percent_Identity=37.719298245614, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25330; Mature: 25330

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYRYTIKELPEEERPREKLIKHGARALSNAELLALIIRTGNKKRTAVELSQDILNFFGG
CCCCCCHHHCCCCCCHHHHHHHHHHHHHCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHH
LEALNDISVEEITRINGVGLAKGAQIQATVELSKRLFKAGKDNRPVVKSPGDVAELVMPD
HHHHHCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
MRYLKQEVFKIILFDIKNQLIAISEISRGGLSSSIVHPREVFKEAIRRSSAAVILVHNHP
HHHHHHHHHHHHHHHHHCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCC
SGDPSPSDEDINVTRRLVDSGKILGVDVLDHIIIGDGVYLSMKKENLI
CCCCCCCCCCHHHHHHHHHCCCEEEHHHHHHHHCCCCEEEEECCCCCC
>Mature Secondary Structure
MEYRYTIKELPEEERPREKLIKHGARALSNAELLALIIRTGNKKRTAVELSQDILNFFGG
CCCCCCHHHCCCCCCHHHHHHHHHHHHHCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHH
LEALNDISVEEITRINGVGLAKGAQIQATVELSKRLFKAGKDNRPVVKSPGDVAELVMPD
HHHHHCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
MRYLKQEVFKIILFDIKNQLIAISEISRGGLSSSIVHPREVFKEAIRRSSAAVILVHNHP
HHHHHHHHHHHHHHHHHCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCC
SGDPSPSDEDINVTRRLVDSGKILGVDVLDHIIIGDGVYLSMKKENLI
CCCCCCCCCCHHHHHHHHHCCCEEEHHHHHHHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA