Click here to switch to the map view.

The map label for this gene is rng [H]

Identifier: 220932249

GI number: 220932249

Start: 1500497

End: 1501966

Strand: Reverse

Name: rng [H]

Synonym: Hore_14130

Alternate gene names: 220932249

Gene position: 1501966-1500497 (Counterclockwise)

Preceding gene: 220932250

Following gene: 220932248

Centisome position: 58.26

GC content: 38.16

Gene sequence:

>1470_bases
ATGGTAAATCAAATAATAATAAATTCAGGAATAAAGGAAAAAAGGGCTGCTATATTAATGGATAATGTTCTGGAGGACAT
AGTTATTGAGCTGGATAGTTATAAAAAAATTGTTGGTAATGTTTACAGGGCCCGGGTTATAGATGTCTTACCGGGAATGC
AGGCTGCGTTTGTCGATATTGGATATGATAAAAATGCCTTTTTACATGTTAGTGATATTTATCCCCTGCTCGACGAAAAG
CAGTTAAAATTAAAAAAAGAAGGCAAGCTCGGGATACAGCATGTTTTACAACCAGGTCAGGAACTTATGGTCCAGGTTGT
AAAAGAACCTATCTACGAAAAAGGGGCAAAAGTAACCTGCAAGATATCCTTACCCGGAAGATATCTGGTATTATTACCTG
GTGAATACAGGACTGCAATTTCACGAAAGATTAAAGACTTTGATGAAAGAGATAGATTGAAGAAAATAGTTGGGAAACTC
AAGGATCCAGATATGGGATTAATAATCAGAACCAACTCACGATACAAAAAGGCTGATTTGCTTGAACTGGATTATTCTTA
CCTGAAACGGACCTGGACCCAGATAAAAGAGAATTATAATAACAGTAAGGCCCCGGACCTTATATATGAGCATGCCAGCC
TGTTAAAGACAATTGTCCGGGATTATTTAAATAAAGATGTGGATAAGGTTTTAATAGATGATGAATCTGATTACCGTGTT
CTTCTGGAGTTGAGTGAAAAACTTGCCCCTGATTTAAAAAACAGGATAAATCTTTATAATAAGAAGATGCCGATATTCCA
TGTTTATGGAATAGAGAAAGAACTTGAAAGGGCCATCAGGAAGAAAATCTGGCTAGATTCTGGTGGCTTTATAGTGATTG
AACAAACTGAGGCCCTGGTGGCTATTGATGTCAATACCGGTAAATATACCGGAAAAAAGAATGCTGCCAGGACCATTTTA
AAAACCAATCTTGAAGCAGCCCGGGAAATTGCCCGGCAGCTGAGGCTTAGAGATATAGGTGGGATAATAATCATTGATTT
TATTGATATGAAAGAAAGACGGCACCAGCAGGAGGTTCTGGAAACCTTTGAGAAGGAACTGGCAAAAGACAGGTCTGTAA
CTTCAATTCAGGGGTTAACTAAACTTGGGTTACTGGAGATGACCCGGCAGAAAGTTCGAGAAGGACTGGGGGAACTTATG
CAAAAAGAGTGTTCTTACTGTCGGGGGAAGGGATTAATTTTATCGGCTAACAGTGTGGCTGAATCAATAATCAGAAATAT
CCAGTTGAAAAAAGCCAGTGAAGAATTTTCCAGGGCAGTAGTAGAGTGTCATCCCCTGGTAGTTTCTAGCCTGAAAGGGG
ATAATGGTGAGGTATTACAAAAAATATTTAAAAAAACAGGTGTCAGCCTTGAATTAAAACCGGTTAATAGTCTTCATATT
GAAAAATACAGGATTAATATAACAGGTTAG

Upstream 100 bases:

>100_bases
AGTACCATTAACTAAGATAACCAGGATAGGGCTTTACGTTACCAAAAATGGGAATCTATATGAATTAATAGATGACCATG
TAGTGGAGGCAGATTCATAG

Downstream 100 bases:

>100_bases
CTCTTAGTTTTTCCAGGTATCCTGTTAATTGCCTTGACTTGAGGTTAGATTTATGCTAAAATAAATTGCTGGAGTTTTAA
TGTTAACTGTATGGTGACGT

Product: Rne/Rng family ribonuclease

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MVNQIIINSGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDIGYDKNAFLHVSDIYPLLDEK
QLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEKGAKVTCKISLPGRYLVLLPGEYRTAISRKIKDFDERDRLKKIVGKL
KDPDMGLIIRTNSRYKKADLLELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDYRV
LLELSEKLAPDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTEALVAIDVNTGKYTGKKNAARTIL
KTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQEVLETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELM
QKECSYCRGKGLILSANSVAESIIRNIQLKKASEEFSRAVVECHPLVVSSLKGDNGEVLQKIFKKTGVSLELKPVNSLHI
EKYRINITG

Sequences:

>Translated_489_residues
MVNQIIINSGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDIGYDKNAFLHVSDIYPLLDEK
QLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEKGAKVTCKISLPGRYLVLLPGEYRTAISRKIKDFDERDRLKKIVGKL
KDPDMGLIIRTNSRYKKADLLELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDYRV
LLELSEKLAPDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTEALVAIDVNTGKYTGKKNAARTIL
KTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQEVLETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELM
QKECSYCRGKGLILSANSVAESIIRNIQLKKASEEFSRAVVECHPLVVSSLKGDNGEVLQKIFKKTGVSLELKPVNSLHI
EKYRINITG
>Mature_489_residues
MVNQIIINSGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDIGYDKNAFLHVSDIYPLLDEK
QLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEKGAKVTCKISLPGRYLVLLPGEYRTAISRKIKDFDERDRLKKIVGKL
KDPDMGLIIRTNSRYKKADLLELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDYRV
LLELSEKLAPDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTEALVAIDVNTGKYTGKKNAARTIL
KTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQEVLETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELM
QKECSYCRGKGLILSANSVAESIIRNIQLKKASEEFSRAVVECHPLVVSSLKGDNGEVLQKIFKKTGVSLELKPVNSLHI
EKYRINITG

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=483, Percent_Identity=39.3374741200828, Blast_Score=354, Evalue=6e-99,
Organism=Escherichia coli, GI1787325, Length=461, Percent_Identity=37.3101952277657, Blast_Score=286, Evalue=2e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 55909; Mature: 55909

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNQIIINSGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDI
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
GYDKNAFLHVSDIYPLLDEKQLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEKGAKVTC
CCCCCCEEEEECCCCCCCCHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCEEEE
KISLPGRYLVLLPGEYRTAISRKIKDFDERDRLKKIVGKLKDPDMGLIIRTNSRYKKADL
EEECCCCEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHH
LELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDYRV
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHH
LLELSEKLAPDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTEALV
HHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHEECCCCEEEEEECCEEE
AIDVNTGKYTGKKNAARTILKTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQEVL
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
ETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELMQKECSYCRGKGLILSANSVA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHH
ESIIRNIQLKKASEEFSRAVVECHPLVVSSLKGDNGEVLQKIFKKTGVSLELKPVNSLHI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCEEE
EKYRINITG
EEEEEEECC
>Mature Secondary Structure
MVNQIIINSGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDI
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
GYDKNAFLHVSDIYPLLDEKQLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEKGAKVTC
CCCCCCEEEEECCCCCCCCHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCEEEE
KISLPGRYLVLLPGEYRTAISRKIKDFDERDRLKKIVGKLKDPDMGLIIRTNSRYKKADL
EEECCCCEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHH
LELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDYRV
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHH
LLELSEKLAPDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTEALV
HHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHEECCCCEEEEEECCEEE
AIDVNTGKYTGKKNAARTILKTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQEVL
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
ETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELMQKECSYCRGKGLILSANSVA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHH
ESIIRNIQLKKASEEFSRAVVECHPLVVSSLKGDNGEVLQKIFKKTGVSLELKPVNSLHI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCEEE
EKYRINITG
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]