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The map label for this gene is aglF [H]

Identifier: 220932156

GI number: 220932156

Start: 1417705

End: 1418574

Strand: Reverse

Name: aglF [H]

Synonym: Hore_13190

Alternate gene names: 220932156

Gene position: 1418574-1417705 (Counterclockwise)

Preceding gene: 220932157

Following gene: 220932155

Centisome position: 55.02

GC content: 33.45

Gene sequence:

>870_bases
GTGGAAGTGTTTAACAAAAAGCTTTGGGGTACCATTTTTTTGGGACCAGCTTTTTTAATAATGGGGATATATCTTTTATA
CCCATCTCTGCAGACTTTTTTAATGAGTTTTATGGATAGAACCGGTAGTGAGTTTGTAGGACTTGAAAATTATAATTATG
CTTTTACAAGTGAGTCGATGTTAATAGCATTTCGTAATAATTTATTATGGTTAATAATATTTACACTGGGTACTGTGGGA
CTGGGCTTAATTTTTGCTATTTTGACAGATAAAGTACCCTATGAAAAGTTAGCTAAATCAATTATTTTTATGCCAATGGC
TATATCTTTTGTCGGGGCCGGTATCATATGGAAATTTGTATATACTTATAAGCCTCCAATTTTCGATCAGATTGGTTTGC
TTAACCAGATAATGGTTTTAATCGGAAAAGAACCGAAAGGATGGTTGTTGGAAGGGCCGTGGGTTAATAATATAGCATTG
ATATATGTAGGAATATGGATATGGACAGGGTTCAGTATGGTTATTCTTTCAGCTGCTTATAAAAATATTCCTTCCCATTT
ACTGGAGGCAGCAAAGGTAGATGGTGCGAACTGGTGGCAGACATTTCGTTATGTTGTTATACCGGAATTGTTACCAACTA
TAATTGTTGTTATTACCTCAAATGTTATCCGGACTTTTAAAATGTTTGATATTATTTATGTCATGACAAATGGTAACTAT
GGAACCGAAGTAATAGCCAATAGAATGTATAAAGAAATGTTTAAATACAGGCATTTTGGTCGGGCCAGTGCAATTGCTGT
AATTCTGTTTATATTAGTACTACCAGTAATAATTATGAATATTAAGAAAATGAAGCAGGAAAACAACTAA

Upstream 100 bases:

>100_bases
CTTAAAATCTATTGAAGCTGTAGCTGAAGAAAACTATTAAGTAAACCAGGGCGGGGTAGTCTAATATTTACAGGCTACCC
CGTTTAAAAAGGAGGAGCTG

Downstream 100 bases:

>100_bases
AACAAGGGGAGAATATTATGGGTACAAAGGTAAATCTTAAAAAAATAATTCTAAATGTTATCCTGTTGGTAATTGTTATT
ACCTGGGTATTACCAACTTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MEVFNKKLWGTIFLGPAFLIMGIYLLYPSLQTFLMSFMDRTGSEFVGLENYNYAFTSESMLIAFRNNLLWLIIFTLGTVG
LGLIFAILTDKVPYEKLAKSIIFMPMAISFVGAGIIWKFVYTYKPPIFDQIGLLNQIMVLIGKEPKGWLLEGPWVNNIAL
IYVGIWIWTGFSMVILSAAYKNIPSHLLEAAKVDGANWWQTFRYVVIPELLPTIIVVITSNVIRTFKMFDIIYVMTNGNY
GTEVIANRMYKEMFKYRHFGRASAIAVILFILVLPVIIMNIKKMKQENN

Sequences:

>Translated_289_residues
MEVFNKKLWGTIFLGPAFLIMGIYLLYPSLQTFLMSFMDRTGSEFVGLENYNYAFTSESMLIAFRNNLLWLIIFTLGTVG
LGLIFAILTDKVPYEKLAKSIIFMPMAISFVGAGIIWKFVYTYKPPIFDQIGLLNQIMVLIGKEPKGWLLEGPWVNNIAL
IYVGIWIWTGFSMVILSAAYKNIPSHLLEAAKVDGANWWQTFRYVVIPELLPTIIVVITSNVIRTFKMFDIIYVMTNGNY
GTEVIANRMYKEMFKYRHFGRASAIAVILFILVLPVIIMNIKKMKQENN
>Mature_289_residues
MEVFNKKLWGTIFLGPAFLIMGIYLLYPSLQTFLMSFMDRTGSEFVGLENYNYAFTSESMLIAFRNNLLWLIIFTLGTVG
LGLIFAILTDKVPYEKLAKSIIFMPMAISFVGAGIIWKFVYTYKPPIFDQIGLLNQIMVLIGKEPKGWLLEGPWVNNIAL
IYVGIWIWTGFSMVILSAAYKNIPSHLLEAAKVDGANWWQTFRYVVIPELLPTIIVVITSNVIRTFKMFDIIYVMTNGNY
GTEVIANRMYKEMFKYRHFGRASAIAVILFILVLPVIIMNIKKMKQENN

Specific function: Part of the binding-protein-dependent transport system for alpha-glucosides such as sucrose, maltose and trehalose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=248, Percent_Identity=25.8064516129032, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790465, Length=262, Percent_Identity=25.9541984732824, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789861, Length=293, Percent_Identity=21.5017064846416, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33142; Mature: 33142

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVFNKKLWGTIFLGPAFLIMGIYLLYPSLQTFLMSFMDRTGSEFVGLENYNYAFTSESM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEECCCCE
LIAFRNNLLWLIIFTLGTVGLGLIFAILTDKVPYEKLAKSIIFMPMAISFVGAGIIWKFV
EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTYKPPIFDQIGLLNQIMVLIGKEPKGWLLEGPWVNNIALIYVGIWIWTGFSMVILSAAY
HHCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KNIPSHLLEAAKVDGANWWQTFRYVVIPELLPTIIVVITSNVIRTFKMFDIIYVMTNGNY
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
GTEVIANRMYKEMFKYRHFGRASAIAVILFILVLPVIIMNIKKMKQENN
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEVFNKKLWGTIFLGPAFLIMGIYLLYPSLQTFLMSFMDRTGSEFVGLENYNYAFTSESM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEECCCCE
LIAFRNNLLWLIIFTLGTVGLGLIFAILTDKVPYEKLAKSIIFMPMAISFVGAGIIWKFV
EEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTYKPPIFDQIGLLNQIMVLIGKEPKGWLLEGPWVNNIALIYVGIWIWTGFSMVILSAAY
HHCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KNIPSHLLEAAKVDGANWWQTFRYVVIPELLPTIIVVITSNVIRTFKMFDIIYVMTNGNY
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
GTEVIANRMYKEMFKYRHFGRASAIAVILFILVLPVIIMNIKKMKQENN
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10400573; 11481430 [H]