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The map label for this gene is yqeN [H]

Identifier: 220932126

GI number: 220932126

Start: 1383066

End: 1384079

Strand: Reverse

Name: yqeN [H]

Synonym: Hore_12890

Alternate gene names: 220932126

Gene position: 1384079-1383066 (Counterclockwise)

Preceding gene: 220932129

Following gene: 220932124

Centisome position: 53.69

GC content: 33.14

Gene sequence:

>1014_bases
ATGGGTCAATTAGAGAAAATATTAAAGGGAGCCAAAAAAAATTTAAAACCGGTATATCTTATTTACGGTGAAGATAAATA
TTTAAGGGAACAATTTATTGATAAATTTATTGATAAGTTTGTAAAACAGGAAGTCAGGGATTTTAACCTAACTTTTATTA
ATGACGGGGAAGATAATTTTGTTGATAGTTTAATTGCAAAAGTAAAAACGTTACCTGTTATGTCTGACAGGAGGTATGTT
GTTGCCCGGTGTAAAGATTATTTTACCGGTAAAAATGGTAATGATAATAAATTAGCAAAATTATTTGATGATTTTCCAGA
GACGACCATTCTCTTAATAGTAGTTGAAGGTCAGATAGATAAACGGTTAAAACCTGCCAAGAAAATTAAAGAGGTTGGTG
AGATAATAAATTTAAAGGCACCCAGGTATAGGCAGCTTGATAACTGGATTATATCTAAATTTAAAAATCATGGAAAAAAG
GTAAATAGATCAGTGGTTCAGTTGCTTGAAGAGATGTTCAGTAATAACCTTGAACAACTGGAAAATGAAATTGAAAAAGT
TTCTATCTATACAGGAGATAAAGATTTAATTTCTCTTGAAGATATTCAAAAGATAATTAGCCGGGACCGGTATATAGAGG
ATAATATGATTTTTAAACTGGTCGATGCTCTTAGTGAAAGGAATGAAGGGCAGGCTATTATTTTGCTCAATGACATGATG
AAGGAAGGTGAAGCACCATTAAGGATCCTGGCCATGGTGGTAAGACAGGTCAGGTTGTTATTATCAGTTAAGGAGCTAAA
GAATGAAGGTAAATCACCGGATCAGATAGCAAAAATATTGGGGGAACACCCATACCCGGTAAAAAAGTGTTACCGCCAGT
GTGATAATTTTAGTGAAGAAGAACTGGAAATAATGCTCGAAAAATTCCTTAAAGCTAATTATGAAATAGTGACCGGAAAA
TATAAAGATAGTCGGTTTTCCCTTGAACTGGCCATGATAAGTTCGATTAATTAA

Upstream 100 bases:

>100_bases
TTTTTTGTTCTAACTTAGTGATTTTTAATAATTCAGGAACTTTTATAATTTCCTGTCGTAAAATTGGGTGACGATTATTA
AAAAAAGCAGGTGAATAAGA

Downstream 100 bases:

>100_bases
TAATATAAAAATTATATATTAAACGTCAAAAATGTAATAAAAATGTAATATAAATTAAAAATGCCAAGGAAATTTAAATC
TTTCCTTGACACTGGGATGT

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MGQLEKILKGAKKNLKPVYLIYGEDKYLREQFIDKFIDKFVKQEVRDFNLTFINDGEDNFVDSLIAKVKTLPVMSDRRYV
VARCKDYFTGKNGNDNKLAKLFDDFPETTILLIVVEGQIDKRLKPAKKIKEVGEIINLKAPRYRQLDNWIISKFKNHGKK
VNRSVVQLLEEMFSNNLEQLENEIEKVSIYTGDKDLISLEDIQKIISRDRYIEDNMIFKLVDALSERNEGQAIILLNDMM
KEGEAPLRILAMVVRQVRLLLSVKELKNEGKSPDQIAKILGEHPYPVKKCYRQCDNFSEEELEIMLEKFLKANYEIVTGK
YKDSRFSLELAMISSIN

Sequences:

>Translated_337_residues
MGQLEKILKGAKKNLKPVYLIYGEDKYLREQFIDKFIDKFVKQEVRDFNLTFINDGEDNFVDSLIAKVKTLPVMSDRRYV
VARCKDYFTGKNGNDNKLAKLFDDFPETTILLIVVEGQIDKRLKPAKKIKEVGEIINLKAPRYRQLDNWIISKFKNHGKK
VNRSVVQLLEEMFSNNLEQLENEIEKVSIYTGDKDLISLEDIQKIISRDRYIEDNMIFKLVDALSERNEGQAIILLNDMM
KEGEAPLRILAMVVRQVRLLLSVKELKNEGKSPDQIAKILGEHPYPVKKCYRQCDNFSEEELEIMLEKFLKANYEIVTGK
YKDSRFSLELAMISSIN
>Mature_336_residues
GQLEKILKGAKKNLKPVYLIYGEDKYLREQFIDKFIDKFVKQEVRDFNLTFINDGEDNFVDSLIAKVKTLPVMSDRRYVV
ARCKDYFTGKNGNDNKLAKLFDDFPETTILLIVVEGQIDKRLKPAKKIKEVGEIINLKAPRYRQLDNWIISKFKNHGKKV
NRSVVQLLEEMFSNNLEQLENEIEKVSIYTGDKDLISLEDIQKIISRDRYIEDNMIFKLVDALSERNEGQAIILLNDMMK
EGEAPLRILAMVVRQVRLLLSVKELKNEGKSPDQIAKILGEHPYPVKKCYRQCDNFSEEELEIMLEKFLKANYEIVTGKY
KDSRFSLELAMISSIN

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921
- InterPro:   IPR010372
- InterPro:   IPR005790 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: 2.7.7.7

Molecular weight: Translated: 39246; Mature: 39115

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQLEKILKGAKKNLKPVYLIYGEDKYLREQFIDKFIDKFVKQEVRDFNLTFINDGEDNF
CCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHH
VDSLIAKVKTLPVMSDRRYVVARCKDYFTGKNGNDNKLAKLFDDFPETTILLIVVEGQID
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCC
KRLKPAKKIKEVGEIINLKAPRYRQLDNWIISKFKNHGKKVNRSVVQLLEEMFSNNLEQL
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ENEIEKVSIYTGDKDLISLEDIQKIISRDRYIEDNMIFKLVDALSERNEGQAIILLNDMM
HHHHHHEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHH
KEGEAPLRILAMVVRQVRLLLSVKELKNEGKSPDQIAKILGEHPYPVKKCYRQCDNFSEE
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHH
ELEIMLEKFLKANYEIVTGKYKDSRFSLELAMISSIN
HHHHHHHHHHHCCCEEEECCCCCCHHEEEEHHHCCCC
>Mature Secondary Structure 
GQLEKILKGAKKNLKPVYLIYGEDKYLREQFIDKFIDKFVKQEVRDFNLTFINDGEDNF
CHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHH
VDSLIAKVKTLPVMSDRRYVVARCKDYFTGKNGNDNKLAKLFDDFPETTILLIVVEGQID
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCC
KRLKPAKKIKEVGEIINLKAPRYRQLDNWIISKFKNHGKKVNRSVVQLLEEMFSNNLEQL
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ENEIEKVSIYTGDKDLISLEDIQKIISRDRYIEDNMIFKLVDALSERNEGQAIILLNDMM
HHHHHHEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHH
KEGEAPLRILAMVVRQVRLLLSVKELKNEGKSPDQIAKILGEHPYPVKKCYRQCDNFSEE
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHH
ELEIMLEKFLKANYEIVTGKYKDSRFSLELAMISSIN
HHHHHHHHHHHCCCEEEECCCCCCHHEEEEHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]