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The map label for this gene is ybeY [C]

Identifier: 220932095

GI number: 220932095

Start: 1351232

End: 1351660

Strand: Reverse

Name: ybeY [C]

Synonym: Hore_12580

Alternate gene names: 220932095

Gene position: 1351660-1351232 (Counterclockwise)

Preceding gene: 220932096

Following gene: 220932094

Centisome position: 52.43

GC content: 39.63

Gene sequence:

>429_bases
ATGGTAAAAGTAGAGATAAATGACAATCAGGGTATTACCGGATCCAATAATGACATCAAACAATTAATTGAAACGGTGAT
TAATAAAACTGCTGAAGTTGAAAAGGCGTCGGGGACGGTAAGTGTGGCTTTAGTAGATAATAAAACTATTGCTGAATTGA
ACAGTAAATACAGGAATGTTGAGGGACCGACTGATGTTCTTTCCTTTCCAATGGATGAAGATATCCTGGGAGATATAATT
ATATCTATAGATAGGGCCCGCCAGCAGGCCGATGAATATGGCCACTCTCTGGAAAGGGAACTGGGCTTTCTTACCGTTCA
CGGTATGCTTCATTTGTTGGGTTATAATCATAAAACAGATGAAGAAAAATGTGTAATGAGGCAGAAAGAGGAGAGGGTTC
TTAAAGAACTTGAGCTCTACCGGGATTGA

Upstream 100 bases:

>100_bases
GTTATTGCCAGAAGTTTTGTCAAGGTTTTAACCGGTGTATATCATCACCGGGTTGAATATCCCGAAAACCTGTTAAAGGA
AATCAAAAAGGGTGATTCCA

Downstream 100 bases:

>100_bases
GGGGGTATTATTTTGCAGGAACACCGCTTAATTGATAGTTTTAATTATGCCCTTGAGGGAATTATCCATTCATTAAAGAC
CCAGCGAAACATGAAGATAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MVKVEINDNQGITGSNNDIKQLIETVINKTAEVEKASGTVSVALVDNKTIAELNSKYRNVEGPTDVLSFPMDEDILGDII
ISIDRARQQADEYGHSLERELGFLTVHGMLHLLGYNHKTDEEKCVMRQKEERVLKELELYRD

Sequences:

>Translated_142_residues
MVKVEINDNQGITGSNNDIKQLIETVINKTAEVEKASGTVSVALVDNKTIAELNSKYRNVEGPTDVLSFPMDEDILGDII
ISIDRARQQADEYGHSLERELGFLTVHGMLHLLGYNHKTDEEKCVMRQKEERVLKELELYRD
>Mature_142_residues
MVKVEINDNQGITGSNNDIKQLIETVINKTAEVEKASGTVSVALVDNKTIAELNSKYRNVEGPTDVLSFPMDEDILGDII
ISIDRARQQADEYGHSLERELGFLTVHGMLHLLGYNHKTDEEKCVMRQKEERVLKELELYRD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Homo sapiens, GI54607072, Length=113, Percent_Identity=36.283185840708, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786880, Length=122, Percent_Identity=31.9672131147541, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 16087; Mature: 16087

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKVEINDNQGITGSNNDIKQLIETVINKTAEVEKASGTVSVALVDNKTIAELNSKYRNV
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCC
EGPTDVLSFPMDEDILGDIIISIDRARQQADEYGHSLERELGFLTVHGMLHLLGYNHKTD
CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EEKCVMRQKEERVLKELELYRD
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVKVEINDNQGITGSNNDIKQLIETVINKTAEVEKASGTVSVALVDNKTIAELNSKYRNV
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCC
EGPTDVLSFPMDEDILGDIIISIDRARQQADEYGHSLERELGFLTVHGMLHLLGYNHKTD
CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EEKCVMRQKEERVLKELELYRD
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA