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The map label for this gene is secF [H]

Identifier: 220932062

GI number: 220932062

Start: 1319568

End: 1320428

Strand: Reverse

Name: secF [H]

Synonym: Hore_12250

Alternate gene names: 220932062

Gene position: 1320428-1319568 (Counterclockwise)

Preceding gene: 220932063

Following gene: 220932061

Centisome position: 51.22

GC content: 36.12

Gene sequence:

>861_bases
ATGGATTTAATGGGAAAAAGAAAAATATGGTATACTATTTCCCTGACTATTATTGTCCTGGGATTAATCTTTTTAATGGT
TAAGGGGTTAAATTTCGGGATCGACTTTCAGGGTGGAACCCTGATGGAACTCAAGTTTGATAAATATGTAAGTAAAGAAG
ATGCCAGGGAGGTTCTGGCAACACTTAATCTGGCCAAGTCAAGTAAAATTCAACAGACTGAAGAAGTTAATGGAGTTATT
ATAAGAACCCATAACTTATCCTCTGAACAGATTTCGGAGATTAAACAGGCCTTTAAAGAAAAGTACCCATCGACTGAGGT
ATTAAGAACAGATATGGTAGGCCCCCTCATCGGTAAAGAGTTAAGAATCAAAGCCTTCTGGGCTTTACTGATAGCTTCTA
TAGCCATTGTTTTATATATAAGTTTAAGGTTTGAATTCAGGTTTGCAATTGTGGCTATTATAGCCCTGTTACATGATGTT
ATTATAACTATAGGACTCTTTGCTATAATTGGCCGGGAGATTAATACACCCTTTGTTGCTGCGTTACTGACTATAGTTGG
GTATTCTATTAATGATACCATTGTTATATTTGATCGTATTAGGGAGAATATGAAATTAATGAGGGGTAAACCATTTATAG
AGCAGGCAAATCAGGCAGTTATTGACACCTTACCACGTTCAATAAATACTTCATTGACTACTCTTGTTGCTGTTCTGGCT
ATATACCTGTTTGGAGGGGCTTCCATAAAGACTTTTATGCTGGCCTTATTTATTGGTATTCTGGCTGGAACTTATTCTTC
AATTTTTGTGGCCAGTCCTCTCCTTGTCAGCTGGGATAAAAAATTAATTTCTAAAAAATAA

Upstream 100 bases:

>100_bases
ACCGCTTTTTATGTTACAAGGAATATTATAAATCTGTTTACAAATACAAAACTACTGAAGAGTTCAGCTGCCTTTAGTGT
TAAGAGGGGGTTGTAAGGAA

Downstream 100 bases:

>100_bases
TTAACGAAAAAATATCCCCCCCTGTATATGTGGGGGGATTATTTTTAAAATATATAATATGGGGAGGCATGGTGTTATGA
CTTCTATTTTGAAAGAAATC

Product: protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MDLMGKRKIWYTISLTIIVLGLIFLMVKGLNFGIDFQGGTLMELKFDKYVSKEDAREVLATLNLAKSSKIQQTEEVNGVI
IRTHNLSSEQISEIKQAFKEKYPSTEVLRTDMVGPLIGKELRIKAFWALLIASIAIVLYISLRFEFRFAIVAIIALLHDV
IITIGLFAIIGREINTPFVAALLTIVGYSINDTIVIFDRIRENMKLMRGKPFIEQANQAVIDTLPRSINTSLTTLVAVLA
IYLFGGASIKTFMLALFIGILAGTYSSIFVASPLLVSWDKKLISKK

Sequences:

>Translated_286_residues
MDLMGKRKIWYTISLTIIVLGLIFLMVKGLNFGIDFQGGTLMELKFDKYVSKEDAREVLATLNLAKSSKIQQTEEVNGVI
IRTHNLSSEQISEIKQAFKEKYPSTEVLRTDMVGPLIGKELRIKAFWALLIASIAIVLYISLRFEFRFAIVAIIALLHDV
IITIGLFAIIGREINTPFVAALLTIVGYSINDTIVIFDRIRENMKLMRGKPFIEQANQAVIDTLPRSINTSLTTLVAVLA
IYLFGGASIKTFMLALFIGILAGTYSSIFVASPLLVSWDKKLISKK
>Mature_286_residues
MDLMGKRKIWYTISLTIIVLGLIFLMVKGLNFGIDFQGGTLMELKFDKYVSKEDAREVLATLNLAKSSKIQQTEEVNGVI
IRTHNLSSEQISEIKQAFKEKYPSTEVLRTDMVGPLIGKELRIKAFWALLIASIAIVLYISLRFEFRFAIVAIIALLHDV
IITIGLFAIIGREINTPFVAALLTIVGYSINDTIVIFDRIRENMKLMRGKPFIEQANQAVIDTLPRSINTSLTTLVAVLA
IYLFGGASIKTFMLALFIGILAGTYSSIFVASPLLVSWDKKLISKK

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=271, Percent_Identity=36.90036900369, Blast_Score=168, Evalue=5e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 31940; Mature: 31940

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLMGKRKIWYTISLTIIVLGLIFLMVKGLNFGIDFQGGTLMELKFDKYVSKEDAREVLA
CCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEEHHHHCCHHHHHHHHH
TLNLAKSSKIQQTEEVNGVIIRTHNLSSEQISEIKQAFKEKYPSTEVLRTDMVGPLIGKE
HHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHH
LRIKAFWALLIASIAIVLYISLRFEFRFAIVAIIALLHDVIITIGLFAIIGREINTPFVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
ALLTIVGYSINDTIVIFDRIRENMKLMRGKPFIEQANQAVIDTLPRSINTSLTTLVAVLA
HHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
IYLFGGASIKTFMLALFIGILAGTYSSIFVASPLLVSWDKKLISKK
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MDLMGKRKIWYTISLTIIVLGLIFLMVKGLNFGIDFQGGTLMELKFDKYVSKEDAREVLA
CCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEEHHHHCCHHHHHHHHH
TLNLAKSSKIQQTEEVNGVIIRTHNLSSEQISEIKQAFKEKYPSTEVLRTDMVGPLIGKE
HHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHH
LRIKAFWALLIASIAIVLYISLRFEFRFAIVAIIALLHDVIITIGLFAIIGREINTPFVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
ALLTIVGYSINDTIVIFDRIRENMKLMRGKPFIEQANQAVIDTLPRSINTSLTTLVAVLA
HHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
IYLFGGASIKTFMLALFIGILAGTYSSIFVASPLLVSWDKKLISKK
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]