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The map label for this gene is ycaJ [C]

Identifier: 220932040

GI number: 220932040

Start: 1297675

End: 1299027

Strand: Reverse

Name: ycaJ [C]

Synonym: Hore_12030

Alternate gene names: 220932040

Gene position: 1299027-1297675 (Counterclockwise)

Preceding gene: 220932041

Following gene: 220932039

Centisome position: 50.39

GC content: 39.25

Gene sequence:

>1353_bases
GTGGTAATTATTAATCTTTTTGAACAAAATTCTGAGAGTAATGACAAAAATAGACCACTGGCTTATCGAATGCGGCCGGG
AAACCTCGATGAATTTTATGGACAGGAAGATGTGATTGGGCCGGGGAAACCACTGCGCCGGGCCATTGAAGCTGACCGGG
TCCAGTCTTTAATATTATATGGTCCGCCCGGTTGTGGTAAGACGAGTCTGGCTCAAGTAATTGCCAGAAAAACAGAGGGT
AAATTTATAAGAATTAATGCTGTGACTTCAGGGGTAAGCAAAATCAGGGAAGTCATAGATAAAGCAAGTAAAAACCGCTC
TCTTCATGGCATTAAAACTATTTTATTTATTGATGAAATCCACCGTTTTAATAAATCACAACAGGATGCCCTTTTGCCTG
CAGTTGAAAGTGGAACCATAACCCTTATCGGGGCAACAACCGAAAACCCTTATTTTGAAGTAAACTCACCACTTTTATCA
CGCTCCCGGATAGTTCGTTTAAAACCACTGAAAAAAGAAGATATAATTAAAATTTTAAAAAATGCCCTTAATAATGAAGA
GAGGGGTCTAGGGAATTATAATATAGATATAAGTCAAGATGCCCTCCAGTATTTAGCTTCAATTGCCGGTGGTGATGCCA
GAACTGCTTTAAATGGACTGGAAATTGCTGTTCTGACTACCCCTCCTGATAAAGAGGGAATTATACATATTAATAAAAAT
ATTATTTCTGAGTCGCTACAAAAAAAGCTACTTAAATACGATAAACAGGGGGATAACCATTATGATGTAGTTTCTGCTTT
TATAAAGAGTATGAGAGGGTCAGATCCCGATGCTGCCCTTTTCTGGTTGGCCAGAATGCTGGAATCAGGTGAAGACCCCC
GTTTTATAGCCAGAAGAATTATTGTACATGCTGCTGAAGATGTGGGTATGGCTGACCCTATGGCTCTTGTTGTTGCTACT
TCAGCTGCCAATGCTGTTGAATATGTAGGTTTACCTGAAGCCAGAATTCCCCTGGCTGAGGCTGTAATATATATTGCTAC
AGCCCCTAAAAGTAATTCAGTCATAACAGGTATTGATGCTGCTTTAAATTATGTAAAAAATAATGATACTGGGGAGGTGC
CTCTTCACTTAAGGGATGCCCATTATAAAGGAGCCAGAAATCTAAAACACGGGTTAGGATATAAATATCCCCATGATTAT
CCCTACCATTATGTTAAACAACAATATGTCCCTGATGAGGTAACTGGAACAGAGTTTTATAAACCCGGTCAGCAGGGCCG
GGAGAAAAAGATAAAGCAGAGGCTTGATTTTTTAAAAAATCTTAATAGTAATGATGATGTAGAGGGTAAATAG

Upstream 100 bases:

>100_bases
TTTACTTACCATGCTTTACTTCTGGATAACCTTCCAATTGACCGTTATGACCAGCCTGTAGACATGGTAATAACGGAACG
CGAAACATTGGTAACCGGGG

Downstream 100 bases:

>100_bases
AGGGGGAGTAAATATGGGTAAGGTATTTTTCACTCCTGACAGGCAAGTGGAAGTTGTTTATAAAGTAAAGGATAGTAAGT
TTTACGGTAATATTAGCAGG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MVIINLFEQNSESNDKNRPLAYRMRPGNLDEFYGQEDVIGPGKPLRRAIEADRVQSLILYGPPGCGKTSLAQVIARKTEG
KFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILFIDEIHRFNKSQQDALLPAVESGTITLIGATTENPYFEVNSPLLS
RSRIVRLKPLKKEDIIKILKNALNNEERGLGNYNIDISQDALQYLASIAGGDARTALNGLEIAVLTTPPDKEGIIHINKN
IISESLQKKLLKYDKQGDNHYDVVSAFIKSMRGSDPDAALFWLARMLESGEDPRFIARRIIVHAAEDVGMADPMALVVAT
SAANAVEYVGLPEARIPLAEAVIYIATAPKSNSVITGIDAALNYVKNNDTGEVPLHLRDAHYKGARNLKHGLGYKYPHDY
PYHYVKQQYVPDEVTGTEFYKPGQQGREKKIKQRLDFLKNLNSNDDVEGK

Sequences:

>Translated_450_residues
MVIINLFEQNSESNDKNRPLAYRMRPGNLDEFYGQEDVIGPGKPLRRAIEADRVQSLILYGPPGCGKTSLAQVIARKTEG
KFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILFIDEIHRFNKSQQDALLPAVESGTITLIGATTENPYFEVNSPLLS
RSRIVRLKPLKKEDIIKILKNALNNEERGLGNYNIDISQDALQYLASIAGGDARTALNGLEIAVLTTPPDKEGIIHINKN
IISESLQKKLLKYDKQGDNHYDVVSAFIKSMRGSDPDAALFWLARMLESGEDPRFIARRIIVHAAEDVGMADPMALVVAT
SAANAVEYVGLPEARIPLAEAVIYIATAPKSNSVITGIDAALNYVKNNDTGEVPLHLRDAHYKGARNLKHGLGYKYPHDY
PYHYVKQQYVPDEVTGTEFYKPGQQGREKKIKQRLDFLKNLNSNDDVEGK
>Mature_450_residues
MVIINLFEQNSESNDKNRPLAYRMRPGNLDEFYGQEDVIGPGKPLRRAIEADRVQSLILYGPPGCGKTSLAQVIARKTEG
KFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILFIDEIHRFNKSQQDALLPAVESGTITLIGATTENPYFEVNSPLLS
RSRIVRLKPLKKEDIIKILKNALNNEERGLGNYNIDISQDALQYLASIAGGDARTALNGLEIAVLTTPPDKEGIIHINKN
IISESLQKKLLKYDKQGDNHYDVVSAFIKSMRGSDPDAALFWLARMLESGEDPRFIARRIIVHAAEDVGMADPMALVVAT
SAANAVEYVGLPEARIPLAEAVIYIATAPKSNSVITGIDAALNYVKNNDTGEVPLHLRDAHYKGARNLKHGLGYKYPHDY
PYHYVKQQYVPDEVTGTEFYKPGQQGREKKIKQRLDFLKNLNSNDDVEGK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=444, Percent_Identity=42.1171171171171, Blast_Score=347, Evalue=9e-96,
Organism=Homo sapiens, GI18426904, Length=444, Percent_Identity=37.8378378378378, Blast_Score=294, Evalue=1e-79,
Organism=Homo sapiens, GI6677723, Length=223, Percent_Identity=27.8026905829596, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1787119, Length=437, Percent_Identity=45.5377574370709, Blast_Score=386, Evalue=1e-108,
Organism=Caenorhabditis elegans, GI71986063, Length=243, Percent_Identity=23.4567901234568, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=38.3886255924171, Blast_Score=273, Evalue=3e-74,
Organism=Saccharomyces cerevisiae, GI6324039, Length=266, Percent_Identity=29.6992481203008, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI18859927, Length=218, Percent_Identity=26.1467889908257, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50016; Mature: 50016

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIINLFEQNSESNDKNRPLAYRMRPGNLDEFYGQEDVIGPGKPLRRAIEADRVQSLILY
CEEEEEECCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCEEEEE
GPPGCGKTSLAQVIARKTEGKFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILFIDEI
CCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
HRFNKSQQDALLPAVESGTITLIGATTENPYFEVNSPLLSRSRIVRLKPLKKEDIIKILK
HHHCCCCCHHHCCEECCCEEEEEEECCCCCCEEECCCHHCCCCEEEECCCCHHHHHHHHH
NALNNEERGLGNYNIDISQDALQYLASIAGGDARTALNGLEIAVLTTPPDKEGIIHINKN
HHHCCHHCCCCCCCEEECHHHHHHHHHHCCCCHHHHHCCEEEEEEECCCCCCCEEEECHH
IISESLQKKLLKYDKQGDNHYDVVSAFIKSMRGSDPDAALFWLARMLESGEDPRFIARRI
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
IVHAAEDVGMADPMALVVATSAANAVEYVGLPEARIPLAEAVIYIATAPKSNSVITGIDA
HHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCCCCCCHHHEEEEEEECCCCCCEEEHHHH
ALNYVKNNDTGEVPLHLRDAHYKGARNLKHGLGYKYPHDYPYHYVKQQYVPDEVTGTEFY
HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
KPGQQGREKKIKQRLDFLKNLNSNDDVEGK
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVIINLFEQNSESNDKNRPLAYRMRPGNLDEFYGQEDVIGPGKPLRRAIEADRVQSLILY
CEEEEEECCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCEEEEE
GPPGCGKTSLAQVIARKTEGKFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILFIDEI
CCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
HRFNKSQQDALLPAVESGTITLIGATTENPYFEVNSPLLSRSRIVRLKPLKKEDIIKILK
HHHCCCCCHHHCCEECCCEEEEEEECCCCCCEEECCCHHCCCCEEEECCCCHHHHHHHHH
NALNNEERGLGNYNIDISQDALQYLASIAGGDARTALNGLEIAVLTTPPDKEGIIHINKN
HHHCCHHCCCCCCCEEECHHHHHHHHHHCCCCHHHHHCCEEEEEEECCCCCCCEEEECHH
IISESLQKKLLKYDKQGDNHYDVVSAFIKSMRGSDPDAALFWLARMLESGEDPRFIARRI
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
IVHAAEDVGMADPMALVVATSAANAVEYVGLPEARIPLAEAVIYIATAPKSNSVITGIDA
HHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCCCCCCHHHEEEEEEECCCCCCEEEHHHH
ALNYVKNNDTGEVPLHLRDAHYKGARNLKHGLGYKYPHDYPYHYVKQQYVPDEVTGTEFY
HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
KPGQQGREKKIKQRLDFLKNLNSNDDVEGK
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]