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The map label for this gene is ytqB [H]

Identifier: 220932037

GI number: 220932037

Start: 1294762

End: 1295352

Strand: Reverse

Name: ytqB [H]

Synonym: Hore_12000

Alternate gene names: 220932037

Gene position: 1295352-1294762 (Counterclockwise)

Preceding gene: 220932038

Following gene: 220932036

Centisome position: 50.24

GC content: 34.52

Gene sequence:

>591_bases
GTGAGGAATTGTTATCAAATAAGGAATGATTTTATTCAGGCCGTTGAGTTTTCCCATGATCTTTTCAGGGTTCATGTAAA
AAAAGGTTCAACAGTAATAGACGCAACAGCCGGAAATGGACATGATACCTGCTTTTTAGCAAGCCTTGTCGGTGAAAAAG
GACAGGTTTATTCTTTTGATATTCAAAAGAAAGCTATTGAAAAGACTAAAGCTCTTTTAAAAGAACAAAACCTGGAAGAA
AGGGTTTATCTTATTCATGATGGGCATGAAAACCTGGATAATTACATAAAAGGGCAGTTTATAGATGGTGTTATTTTTAA
TCTGGGATATTTACCCGGGGGAGATAAAAAAATAATAACCACACCTGATACAACTATTACTGCTCTTAAAAAATGTCTTC
CTCTGATCAAACCAGGGGGAATAGTTGTTATAGTTATATATACTGGACATGAGGGAGGTAAGGATGAAGAAGAAAAGATA
ATAAAATATGCGGAGAAACTCAATTATACTGAATATAATGTGCTCCGTTATCATTTTATAAATCAGAGAAAAACACCACC
TCAGGTTCTGGCCATTAAAAAAAGGCTATAG

Upstream 100 bases:

>100_bases
TTCTTCCTACCTTTTCTTGACACGTACATTTCTAAATATAAATTTGCTTTGATAGTAACAATAAGATAAAATTTATAAAT
AAGACCGGGGGTGTTATCAA

Downstream 100 bases:

>100_bases
GGTCATTCATAATTAATTTATATGGATACACTTTTTATGGACACATACGAGGAGATGACTTCCAGTAAAATCAATTATTA
TAAAATATAAATTATAAAGT

Product: putative rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MRNCYQIRNDFIQAVEFSHDLFRVHVKKGSTVIDATAGNGHDTCFLASLVGEKGQVYSFDIQKKAIEKTKALLKEQNLEE
RVYLIHDGHENLDNYIKGQFIDGVIFNLGYLPGGDKKIITTPDTTITALKKCLPLIKPGGIVVIVIYTGHEGGKDEEEKI
IKYAEKLNYTEYNVLRYHFINQRKTPPQVLAIKKRL

Sequences:

>Translated_196_residues
MRNCYQIRNDFIQAVEFSHDLFRVHVKKGSTVIDATAGNGHDTCFLASLVGEKGQVYSFDIQKKAIEKTKALLKEQNLEE
RVYLIHDGHENLDNYIKGQFIDGVIFNLGYLPGGDKKIITTPDTTITALKKCLPLIKPGGIVVIVIYTGHEGGKDEEEKI
IKYAEKLNYTEYNVLRYHFINQRKTPPQVLAIKKRL
>Mature_196_residues
MRNCYQIRNDFIQAVEFSHDLFRVHVKKGSTVIDATAGNGHDTCFLASLVGEKGQVYSFDIQKKAIEKTKALLKEQNLEE
RVYLIHDGHENLDNYIKGQFIDGVIFNLGYLPGGDKKIITTPDTTITALKKCLPLIKPGGIVVIVIYTGHEGGKDEEEKI
IKYAEKLNYTEYNVLRYHFINQRKTPPQVLAIKKRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010719 [H]

Pfam domain/function: PF06962 rRNA_methylase [H]

EC number: NA

Molecular weight: Translated: 22296; Mature: 22296

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNCYQIRNDFIQAVEFSHDLFRVHVKKGSTVIDATAGNGHDTCFLASLVGEKGQVYSFD
CCHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCHHHHEEHHCCCCCEEEEH
IQKKAIEKTKALLKEQNLEERVYLIHDGHENLDNYIKGQFIDGVIFNLGYLPGGDKKIIT
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCHHHHHHEEECCCCCCCCEEEEE
TPDTTITALKKCLPLIKPGGIVVIVIYTGHEGGKDEEEKIIKYAEKLNYTEYNVLRYHFI
CCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEE
NQRKTPPQVLAIKKRL
CCCCCCHHHHHEECCC
>Mature Secondary Structure
MRNCYQIRNDFIQAVEFSHDLFRVHVKKGSTVIDATAGNGHDTCFLASLVGEKGQVYSFD
CCHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCHHHHEEHHCCCCCEEEEH
IQKKAIEKTKALLKEQNLEERVYLIHDGHENLDNYIKGQFIDGVIFNLGYLPGGDKKIIT
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCHHHHHHEEECCCCCCCCEEEEE
TPDTTITALKKCLPLIKPGGIVVIVIYTGHEGGKDEEEKIIKYAEKLNYTEYNVLRYHFI
CCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEE
NQRKTPPQVLAIKKRL
CCCCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]